Hb_006934_020

Information

Type -
Description -
Location Contig6934: 41489-42932
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09051g
description hypothetical protein
nr
ID XP_006384171.1
description hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID U5GEP0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09051g PE=3 SV=1
Gene Ontology
ID GO:0005524
description mitochondrial chaperone bcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54502: 41165-42972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006934_020 0.0 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
2 Hb_000847_050 0.1031194969 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
3 Hb_000739_160 0.1071086821 - - DNA binding protein, putative [Ricinus communis]
4 Hb_002671_060 0.107848452 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
5 Hb_006634_090 0.1086868997 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
6 Hb_001008_110 0.1117931808 - - -
7 Hb_004421_010 0.1144705647 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
8 Hb_000477_110 0.1185440295 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
9 Hb_064985_010 0.1196127835 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
10 Hb_012743_020 0.1257735957 - - serine/threonine protein phosphatase, putative [Ricinus communis]
11 Hb_000398_140 0.1264337771 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
12 Hb_000411_050 0.1266993336 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
13 Hb_003106_110 0.1301791065 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
14 Hb_001776_100 0.130573153 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
15 Hb_005357_020 0.1307872088 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003964_010 0.1309026503 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
17 Hb_000613_250 0.1326705733 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
18 Hb_006788_100 0.1332838367 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
19 Hb_002450_180 0.1342436331 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014361_020 0.1346173452 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]

Gene co-expression network

sample Hb_006934_020 Hb_006934_020 Hb_000847_050 Hb_000847_050 Hb_006934_020--Hb_000847_050 Hb_000739_160 Hb_000739_160 Hb_006934_020--Hb_000739_160 Hb_002671_060 Hb_002671_060 Hb_006934_020--Hb_002671_060 Hb_006634_090 Hb_006634_090 Hb_006934_020--Hb_006634_090 Hb_001008_110 Hb_001008_110 Hb_006934_020--Hb_001008_110 Hb_004421_010 Hb_004421_010 Hb_006934_020--Hb_004421_010 Hb_000454_200 Hb_000454_200 Hb_000847_050--Hb_000454_200 Hb_000411_050 Hb_000411_050 Hb_000847_050--Hb_000411_050 Hb_002450_180 Hb_002450_180 Hb_000847_050--Hb_002450_180 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_003106_110 Hb_003106_110 Hb_000739_160--Hb_003106_110 Hb_000096_210 Hb_000096_210 Hb_000739_160--Hb_000096_210 Hb_000739_160--Hb_006634_090 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280 Hb_002003_040 Hb_002003_040 Hb_002671_060--Hb_002003_040 Hb_073808_010 Hb_073808_010 Hb_002671_060--Hb_073808_010 Hb_003226_030 Hb_003226_030 Hb_002671_060--Hb_003226_030 Hb_042202_020 Hb_042202_020 Hb_002671_060--Hb_042202_020 Hb_000085_380 Hb_000085_380 Hb_002671_060--Hb_000085_380 Hb_006634_090--Hb_002450_180 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_000613_250 Hb_000613_250 Hb_004421_010--Hb_000613_250 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_000472_020 Hb_000472_020 Hb_004421_010--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23098 24.6732 16.7884 23.8024 0.0483688 0.707609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.230332 0.181189 0.168919 22.5421 15.2249

CAGE analysis