Hb_001776_100

Information

Type -
Description -
Location Contig1776: 88159-90106
Sequence    

Annotation

kegg
ID rcu:RCOM_1166150
description hypothetical protein
nr
ID XP_012075960.1
description PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
swissprot
ID Q41050
description Outer envelope pore protein 16, chloroplastic OS=Pisum sativum GN=OEP16 PE=1 SV=1
trembl
ID A0A067KEE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11047 PE=4 SV=1
Gene Ontology
ID GO:0005773
description outer envelope pore protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17071: 88223-90132 , PASA_asmbl_17072: 88491-88821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_100 0.0 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
2 Hb_004421_010 0.0845224538 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_006528_020 0.103192985 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006634_090 0.1086864041 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
5 Hb_002450_180 0.1162033688 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000411_050 0.118314894 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
7 Hb_002078_250 0.120003771 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002301_370 0.1255574465 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
9 Hb_000398_140 0.1258766839 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
10 Hb_003411_020 0.1273193343 - - alpha-glucosidase, putative [Ricinus communis]
11 Hb_003025_150 0.1290081759 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000613_250 0.1291698827 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
13 Hb_000739_160 0.1295358229 - - DNA binding protein, putative [Ricinus communis]
14 Hb_006934_020 0.130573153 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
15 Hb_003964_010 0.1319158909 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
16 Hb_000946_050 0.1329393789 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000003_020 0.1333761233 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
18 Hb_001048_070 0.1337548439 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
19 Hb_012787_060 0.1337617111 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
20 Hb_000024_130 0.1338900263 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001776_100 Hb_001776_100 Hb_004421_010 Hb_004421_010 Hb_001776_100--Hb_004421_010 Hb_006528_020 Hb_006528_020 Hb_001776_100--Hb_006528_020 Hb_006634_090 Hb_006634_090 Hb_001776_100--Hb_006634_090 Hb_002450_180 Hb_002450_180 Hb_001776_100--Hb_002450_180 Hb_000411_050 Hb_000411_050 Hb_001776_100--Hb_000411_050 Hb_002078_250 Hb_002078_250 Hb_001776_100--Hb_002078_250 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_000613_250 Hb_000613_250 Hb_004421_010--Hb_000613_250 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_000472_020 Hb_000472_020 Hb_004421_010--Hb_000472_020 Hb_000731_210 Hb_000731_210 Hb_006528_020--Hb_000731_210 Hb_005542_030 Hb_005542_030 Hb_006528_020--Hb_005542_030 Hb_002301_370 Hb_002301_370 Hb_006528_020--Hb_002301_370 Hb_004678_030 Hb_004678_030 Hb_006528_020--Hb_004678_030 Hb_000318_170 Hb_000318_170 Hb_006528_020--Hb_000318_170 Hb_006634_090--Hb_002450_180 Hb_000739_160 Hb_000739_160 Hb_006634_090--Hb_000739_160 Hb_000847_050 Hb_000847_050 Hb_006634_090--Hb_000847_050 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_000096_210 Hb_000096_210 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_002450_180--Hb_000411_050 Hb_000454_200 Hb_000454_200 Hb_002450_180--Hb_000454_200 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_003376_300 Hb_003376_300 Hb_002450_180--Hb_003376_300 Hb_000411_050--Hb_002078_250 Hb_000411_050--Hb_000847_050 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171579 9.44002 8.49578 11.7438 0.124611 0.16532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.601773 0.473117 0 8.09114 5.06109

CAGE analysis