Hb_012743_020

Information

Type -
Description -
Location Contig12743: 27993-31144
Sequence    

Annotation

kegg
ID rcu:RCOM_1006980
description serine/threonine protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002531533.1
description serine/threonine protein phosphatase, putative [Ricinus communis]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID B9SZW4
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_1006980 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08372: 26869-30811 , PASA_asmbl_08373: 30875-30975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012743_020 0.0 - - serine/threonine protein phosphatase, putative [Ricinus communis]
2 Hb_005357_020 0.0731510052 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003226_030 0.0752246223 - - sucrose synthase 5 [Hevea brasiliensis]
4 Hb_000589_240 0.0829637481 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_001143_140 0.0885686055 - - Aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_029260_010 0.0927276807 - - nitrate transporter, putative [Ricinus communis]
7 Hb_002000_130 0.1011349614 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
8 Hb_000398_140 0.1020610468 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
9 Hb_000028_460 0.1021373471 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
10 Hb_138606_020 0.1022457836 - - Nitrate transporter2.5 [Theobroma cacao]
11 Hb_004421_010 0.1049731807 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_008092_020 0.1089751242 - - transcription factor, putative [Ricinus communis]
13 Hb_001544_070 0.1126113203 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
14 Hb_000347_420 0.1175519111 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
15 Hb_174101_010 0.1177715693 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
16 Hb_004122_060 0.1187630594 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
17 Hb_000847_050 0.119335052 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
18 Hb_007943_020 0.1205727844 - - transcription factor, putative [Ricinus communis]
19 Hb_000095_070 0.1236407732 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010417_100 0.1244275238 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]

Gene co-expression network

sample Hb_012743_020 Hb_012743_020 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_005357_020--Hb_000589_240 Hb_138606_020 Hb_138606_020 Hb_005357_020--Hb_138606_020 Hb_005357_020--Hb_029260_010 Hb_003226_030--Hb_002000_130 Hb_007943_020 Hb_007943_020 Hb_003226_030--Hb_007943_020 Hb_003226_030--Hb_001143_140 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_004306_140 Hb_004306_140 Hb_000589_240--Hb_004306_140 Hb_000589_240--Hb_001143_140 Hb_000028_460 Hb_000028_460 Hb_000589_240--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_000589_240--Hb_000472_020 Hb_004307_070 Hb_004307_070 Hb_001143_140--Hb_004307_070 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_001143_140--Hb_002000_130 Hb_000614_190 Hb_000614_190 Hb_001143_140--Hb_000614_190 Hb_029260_010--Hb_138606_020 Hb_000347_420 Hb_000347_420 Hb_029260_010--Hb_000347_420 Hb_000840_050 Hb_000840_050 Hb_029260_010--Hb_000840_050 Hb_029260_010--Hb_007943_020 Hb_002000_130--Hb_008092_020 Hb_002000_130--Hb_000028_460 Hb_003835_030 Hb_003835_030 Hb_002000_130--Hb_003835_030 Hb_002000_130--Hb_000614_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169118 25.3045 11.9617 30.5499 0.0508483 0.105287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.371046 0.316239 0.137157 27.1654 19.2948

CAGE analysis