Hb_005357_020

Information

Type -
Description -
Location Contig5357: 37892-40768
Sequence    

Annotation

kegg
ID rcu:RCOM_0905810
description hypothetical protein
nr
ID XP_002518540.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47542: 37726-39128 , PASA_asmbl_47543: 38727-39940 , PASA_asmbl_47545: 39982-40332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012743_020 0.0731510052 - - serine/threonine protein phosphatase, putative [Ricinus communis]
3 Hb_010417_100 0.079953713 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
4 Hb_038777_010 0.0827622458 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
5 Hb_000589_240 0.0844529095 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_138606_020 0.0885667039 - - Nitrate transporter2.5 [Theobroma cacao]
7 Hb_029260_010 0.0890050376 - - nitrate transporter, putative [Ricinus communis]
8 Hb_007894_030 0.0901923039 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_000028_460 0.0929084594 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
10 Hb_000497_100 0.0945165071 - - respiratory burst oxidase D [Manihot esculenta]
11 Hb_003226_030 0.1002942017 - - sucrose synthase 5 [Hevea brasiliensis]
12 Hb_000840_050 0.1034811685 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
13 Hb_001369_070 0.1070300955 - - unnamed protein product [Vitis vinifera]
14 Hb_006634_090 0.1106528881 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
15 Hb_020285_010 0.1116164109 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
16 Hb_000847_050 0.1129469998 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
17 Hb_007943_020 0.115020781 - - transcription factor, putative [Ricinus communis]
18 Hb_001421_010 0.1166126198 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
19 Hb_001636_010 0.1170428059 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
20 Hb_175758_010 0.1238852866 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_020 Hb_005357_020 Hb_012743_020 Hb_012743_020 Hb_005357_020--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_138606_020 Hb_138606_020 Hb_005357_020--Hb_138606_020 Hb_029260_010 Hb_029260_010 Hb_005357_020--Hb_029260_010 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_007894_030 Hb_007894_030 Hb_010417_100--Hb_007894_030 Hb_001636_010 Hb_001636_010 Hb_010417_100--Hb_001636_010 Hb_000840_050 Hb_000840_050 Hb_010417_100--Hb_000840_050 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_000497_100 Hb_000497_100 Hb_010417_100--Hb_000497_100 Hb_020285_010 Hb_020285_010 Hb_038777_010--Hb_020285_010 Hb_038777_010--Hb_000497_100 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_038777_010--Hb_007894_030 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_004306_140 Hb_004306_140 Hb_000589_240--Hb_004306_140 Hb_000589_240--Hb_001143_140 Hb_000589_240--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_000589_240--Hb_000472_020 Hb_138606_020--Hb_029260_010 Hb_138606_020--Hb_000840_050 Hb_009659_040 Hb_009659_040 Hb_138606_020--Hb_009659_040 Hb_000347_420 Hb_000347_420 Hb_138606_020--Hb_000347_420 Hb_138606_020--Hb_012743_020 Hb_029260_010--Hb_000347_420 Hb_029260_010--Hb_000840_050 Hb_007943_020 Hb_007943_020 Hb_029260_010--Hb_007943_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0557233 14.3914 6.21675 12.4545 0.109845 0.0402028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158703 0.099884 0.0937798 15.7117 7.72702

CAGE analysis