Hb_000028_460

Information

Type -
Description -
Location Contig28: 424898-432665
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05340g
description hypothetical protein
nr
ID XP_006374240.1
description hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
swissprot
ID Q93WJ9
description Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1
trembl
ID B9N391
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s05340g PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription repressor kan1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_460 0.0 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
2 Hb_000497_100 0.0785509502 - - respiratory burst oxidase D [Manihot esculenta]
3 Hb_008092_020 0.0891018893 - - transcription factor, putative [Ricinus communis]
4 Hb_038777_010 0.0907469404 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
5 Hb_005357_020 0.0929084594 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002000_130 0.0945821771 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
7 Hb_012743_020 0.1021373471 - - serine/threonine protein phosphatase, putative [Ricinus communis]
8 Hb_000589_240 0.1043645657 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_001369_070 0.104905703 - - unnamed protein product [Vitis vinifera]
10 Hb_003226_030 0.1066455656 - - sucrose synthase 5 [Hevea brasiliensis]
11 Hb_005784_020 0.1074128515 - - Protein MKS1, putative [Ricinus communis]
12 Hb_029260_010 0.1076508561 - - nitrate transporter, putative [Ricinus communis]
13 Hb_007894_030 0.1099698847 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_002477_080 0.1103137083 - - hypothetical protein RCOM_0653450 [Ricinus communis]
15 Hb_126466_010 0.11038178 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_174101_010 0.1114580616 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
17 Hb_005054_280 0.1122012461 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
18 Hb_001143_140 0.1151116221 - - Aldehyde dehydrogenase, putative [Ricinus communis]
19 Hb_002431_090 0.1162388499 - - conserved hypothetical protein [Ricinus communis]
20 Hb_020285_010 0.1183673546 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000028_460 Hb_000028_460 Hb_000497_100 Hb_000497_100 Hb_000028_460--Hb_000497_100 Hb_008092_020 Hb_008092_020 Hb_000028_460--Hb_008092_020 Hb_038777_010 Hb_038777_010 Hb_000028_460--Hb_038777_010 Hb_005357_020 Hb_005357_020 Hb_000028_460--Hb_005357_020 Hb_002000_130 Hb_002000_130 Hb_000028_460--Hb_002000_130 Hb_012743_020 Hb_012743_020 Hb_000028_460--Hb_012743_020 Hb_020285_010 Hb_020285_010 Hb_000497_100--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_000497_100--Hb_001369_070 Hb_007894_030 Hb_007894_030 Hb_000497_100--Hb_007894_030 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_003835_030 Hb_003835_030 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_002000_130 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020 Hb_038777_010--Hb_020285_010 Hb_038777_010--Hb_005357_020 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_038777_010--Hb_007894_030 Hb_005357_020--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_138606_020 Hb_138606_020 Hb_005357_020--Hb_138606_020 Hb_029260_010 Hb_029260_010 Hb_005357_020--Hb_029260_010 Hb_003226_030 Hb_003226_030 Hb_002000_130--Hb_003226_030 Hb_002000_130--Hb_003835_030 Hb_001143_140 Hb_001143_140 Hb_002000_130--Hb_001143_140 Hb_000614_190 Hb_000614_190 Hb_002000_130--Hb_000614_190 Hb_012743_020--Hb_003226_030 Hb_012743_020--Hb_000589_240 Hb_012743_020--Hb_001143_140 Hb_012743_020--Hb_029260_010 Hb_012743_020--Hb_002000_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0264959 12.5396 3.17481 9.98251 0.0347461 0.0103542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537886 0.0211598 0 8.76949 5.47252

CAGE analysis