Hb_002000_130

Information

Type -
Description -
Location Contig2000: 135283-138033
Sequence    

Annotation

kegg
ID egr:104444686
description abscisic stress-ripening protein 2-like
nr
ID XP_010056726.1
description PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
swissprot
ID Q08655
description Abscisic stress-ripening protein 1 OS=Solanum lycopersicum GN=ASR1 PE=2 SV=1
trembl
ID A0A059C5M8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02058 PE=4 SV=1
Gene Ontology
ID GO:0006950
description abscisic stress-ripening protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20258: 135284-135977 , PASA_asmbl_20259: 137168-138100
cDNA
(Sanger)
(ID:Location)		 007_F20.ab1: 137208-138097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_130 0.0 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
2 Hb_003226_030 0.0844921461 - - sucrose synthase 5 [Hevea brasiliensis]
3 Hb_008092_020 0.0905375133 - - transcription factor, putative [Ricinus communis]
4 Hb_000028_460 0.0945821771 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
5 Hb_003835_030 0.0951091191 - - glycosyltransferase, partial [Arabidopsis thaliana]
6 Hb_001143_140 0.095893079 - - Aldehyde dehydrogenase, putative [Ricinus communis]
7 Hb_000614_190 0.1008585719 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
8 Hb_012743_020 0.1011349614 - - serine/threonine protein phosphatase, putative [Ricinus communis]
9 Hb_005034_010 0.104961322 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_004306_140 0.1119914729 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_005054_280 0.1186398375 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
12 Hb_000589_240 0.1197680987 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_001013_050 0.1263934151 - - unnamed protein product [Coffea canephora]
14 Hb_114310_050 0.1268574048 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
15 Hb_005357_020 0.1278261537 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002010_070 0.129006657 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
17 Hb_002671_060 0.130949354 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
18 Hb_008111_010 0.1324570657 - - hypothetical protein VITISV_021527 [Vitis vinifera]
19 Hb_174101_010 0.1326019351 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_038777_010 0.1331110093 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002000_130 Hb_002000_130 Hb_003226_030 Hb_003226_030 Hb_002000_130--Hb_003226_030 Hb_008092_020 Hb_008092_020 Hb_002000_130--Hb_008092_020 Hb_000028_460 Hb_000028_460 Hb_002000_130--Hb_000028_460 Hb_003835_030 Hb_003835_030 Hb_002000_130--Hb_003835_030 Hb_001143_140 Hb_001143_140 Hb_002000_130--Hb_001143_140 Hb_000614_190 Hb_000614_190 Hb_002000_130--Hb_000614_190 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_007943_020 Hb_007943_020 Hb_003226_030--Hb_007943_020 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_003226_030--Hb_008092_020 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020 Hb_000497_100 Hb_000497_100 Hb_000028_460--Hb_000497_100 Hb_038777_010 Hb_038777_010 Hb_000028_460--Hb_038777_010 Hb_000028_460--Hb_005357_020 Hb_000028_460--Hb_012743_020 Hb_003835_030--Hb_001013_050 Hb_000589_330 Hb_000589_330 Hb_003835_030--Hb_000589_330 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_003835_030--Hb_000472_020 Hb_004307_070 Hb_004307_070 Hb_001143_140--Hb_004307_070 Hb_001143_140--Hb_012743_020 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_001143_140--Hb_000614_190 Hb_114310_050 Hb_114310_050 Hb_000614_190--Hb_114310_050 Hb_005054_280 Hb_005054_280 Hb_000614_190--Hb_005054_280 Hb_007420_020 Hb_007420_020 Hb_000614_190--Hb_007420_020 Hb_000614_190--Hb_026144_030 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4532 478.1 122.644 395.822 1.29705 5.541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3038 8.14722 0.892442 297.4 305.272

CAGE analysis