Hb_114310_050

Information

Type -
Description -
Location Contig114310: 24147-26990
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25480g
description POPTRDRAFT_818768; Iron(III)-zinc(II) purple acid phosphatase precursor family protein
nr
ID XP_002307690.1
description Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
swissprot
ID Q09131
description Purple acid phosphatase OS=Glycine max GN=PAP PE=1 SV=2
trembl
ID B9H4H5
description Purple acid phosphatase OS=Populus trichocarpa GN=POPTR_0005s25480g PE=3 SV=1
Gene Ontology
ID GO:0005829
description purple acid phosphatase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04367: 24128-26994 , PASA_asmbl_04368: 24263-24619
cDNA
(Sanger)
(ID:Location)		 027_H04.ab1: 24128-25235

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_050 0.0 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
2 Hb_007420_020 0.0562980163 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_005054_280 0.0692020458 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_000614_190 0.0702994179 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
5 Hb_007420_010 0.0761221622 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
6 Hb_004306_140 0.0845413995 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_001515_030 0.0941349463 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_167272_010 0.0942774627 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_000563_120 0.0985311926 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
10 Hb_001153_090 0.1001363332 - - PREDICTED: protein FAM63A [Jatropha curcas]
11 Hb_014361_020 0.1020560219 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
12 Hb_023344_130 0.1026081805 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_006269_010 0.1031556855 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
14 Hb_009803_030 0.1039140825 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_003077_140 0.1041484943 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
16 Hb_007894_030 0.1090334877 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000501_040 0.109807933 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000037_010 0.1103772237 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
19 Hb_123560_050 0.1108238274 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
20 Hb_000085_220 0.1123134015 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_114310_050 Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_114310_050--Hb_007420_020 Hb_005054_280 Hb_005054_280 Hb_114310_050--Hb_005054_280 Hb_000614_190 Hb_000614_190 Hb_114310_050--Hb_000614_190 Hb_007420_010 Hb_007420_010 Hb_114310_050--Hb_007420_010 Hb_004306_140 Hb_004306_140 Hb_114310_050--Hb_004306_140 Hb_001515_030 Hb_001515_030 Hb_114310_050--Hb_001515_030 Hb_007420_020--Hb_005054_280 Hb_007420_020--Hb_000614_190 Hb_007420_020--Hb_007420_010 Hb_123560_050 Hb_123560_050 Hb_007420_020--Hb_123560_050 Hb_026144_030 Hb_026144_030 Hb_007420_020--Hb_026144_030 Hb_005054_280--Hb_000614_190 Hb_003562_040 Hb_003562_040 Hb_005054_280--Hb_003562_040 Hb_005034_010 Hb_005034_010 Hb_005054_280--Hb_005034_010 Hb_008111_010 Hb_008111_010 Hb_005054_280--Hb_008111_010 Hb_000614_190--Hb_026144_030 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030 Hb_167272_010 Hb_167272_010 Hb_007420_010--Hb_167272_010 Hb_000501_040 Hb_000501_040 Hb_007420_010--Hb_000501_040 Hb_009803_030 Hb_009803_030 Hb_007420_010--Hb_009803_030 Hb_007420_010--Hb_001515_030 Hb_007894_030 Hb_007894_030 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_001515_030--Hb_167272_010 Hb_001515_030--Hb_009803_030 Hb_005569_030 Hb_005569_030 Hb_001515_030--Hb_005569_030 Hb_008040_060 Hb_008040_060 Hb_001515_030--Hb_008040_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225405 37.2734 13.7937 17.5668 0.0557055 0.0575342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0534003 0.0630215 0 22.1071 21.6929

CAGE analysis