Hb_000501_040

Information

Type -
Description -
Location Contig501: 26857-41087
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002529807.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9SUY8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0605720 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45845: 27065-27283 , PASA_asmbl_45846: 27446-27915 , PASA_asmbl_45847: 28176-28382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000501_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_007420_010 0.0700887845 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
3 Hb_031862_020 0.0741413121 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
4 Hb_167272_010 0.0917289753 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
5 Hb_029576_100 0.0922501815 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
6 Hb_127661_010 0.0948593705 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_023344_130 0.0990314698 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_007420_020 0.1028885833 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000085_220 0.1068684162 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001634_080 0.1080648029 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_114310_050 0.109807933 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
12 Hb_006269_010 0.1131942171 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
13 Hb_001153_090 0.1153598871 - - PREDICTED: protein FAM63A [Jatropha curcas]
14 Hb_006788_100 0.1177330663 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
15 Hb_002849_120 0.1177970881 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_000108_090 0.1189368985 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_001819_010 0.1239369899 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
18 Hb_033153_040 0.1253100404 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_000237_070 0.1271037641 - - Purple acid phosphatase precursor, putative [Ricinus communis]
20 Hb_000037_010 0.127324156 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]

Gene co-expression network

sample Hb_000501_040 Hb_000501_040 Hb_007420_010 Hb_007420_010 Hb_000501_040--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_000501_040--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000501_040--Hb_167272_010 Hb_029576_100 Hb_029576_100 Hb_000501_040--Hb_029576_100 Hb_127661_010 Hb_127661_010 Hb_000501_040--Hb_127661_010 Hb_023344_130 Hb_023344_130 Hb_000501_040--Hb_023344_130 Hb_007420_010--Hb_167272_010 Hb_114310_050 Hb_114310_050 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_009803_030 Hb_009803_030 Hb_007420_010--Hb_009803_030 Hb_001515_030 Hb_001515_030 Hb_007420_010--Hb_001515_030 Hb_031862_020--Hb_167272_010 Hb_000237_070 Hb_000237_070 Hb_031862_020--Hb_000237_070 Hb_000085_220 Hb_000085_220 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_031862_020--Hb_007420_010 Hb_167272_010--Hb_001515_030 Hb_167272_010--Hb_000237_070 Hb_167272_010--Hb_009803_030 Hb_167272_010--Hb_000085_220 Hb_013786_010 Hb_013786_010 Hb_029576_100--Hb_013786_010 Hb_029576_100--Hb_127661_010 Hb_000417_250 Hb_000417_250 Hb_029576_100--Hb_000417_250 Hb_000261_370 Hb_000261_370 Hb_029576_100--Hb_000261_370 Hb_000680_020 Hb_000680_020 Hb_029576_100--Hb_000680_020 Hb_127661_010--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_127661_010--Hb_000680_020 Hb_001153_090 Hb_001153_090 Hb_023344_130--Hb_001153_090 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_001160_020 Hb_001160_020 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_001956_080 Hb_001956_080 Hb_023344_130--Hb_001956_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.684936 0.413603 0.225795 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.495365 0.396416

CAGE analysis