Hb_029576_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig29576: 97204-99691
Sequence    

Annotation

kegg
ID rcu:RCOM_1225970
description WRKY transcription factor, putative
nr
ID XP_012087599.1
description PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
swissprot
ID Q9C519
description WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1
trembl
ID S5CFT2
description Uncharacterized protein OS=Jatropha curcas GN=WRKY32 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30909: 97733-99651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029576_100 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
2 Hb_013786_010 0.0759824449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_127661_010 0.0842960287 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000417_250 0.085158699 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
5 Hb_000501_040 0.0922501815 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000261_370 0.0932357845 - - -
7 Hb_000680_020 0.1063685388 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001634_080 0.1066513351 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000108_090 0.1212292532 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_002849_120 0.1227701648 - - ferric reductase oxidase [Manihot esculenta]
11 Hb_031862_020 0.1352366307 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_007420_010 0.136524836 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
13 Hb_033153_040 0.1387012865 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_023344_130 0.1391421084 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_001160_020 0.1394464296 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
16 Hb_003683_200 0.1436449557 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_016637_020 0.1458575296 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
18 Hb_001388_020 0.1461551572 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
19 Hb_000116_330 0.1464213876 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
20 Hb_003387_080 0.1480676982 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_029576_100 Hb_029576_100 Hb_013786_010 Hb_013786_010 Hb_029576_100--Hb_013786_010 Hb_127661_010 Hb_127661_010 Hb_029576_100--Hb_127661_010 Hb_000417_250 Hb_000417_250 Hb_029576_100--Hb_000417_250 Hb_000501_040 Hb_000501_040 Hb_029576_100--Hb_000501_040 Hb_000261_370 Hb_000261_370 Hb_029576_100--Hb_000261_370 Hb_000680_020 Hb_000680_020 Hb_029576_100--Hb_000680_020 Hb_013786_010--Hb_000417_250 Hb_001388_020 Hb_001388_020 Hb_013786_010--Hb_001388_020 Hb_013786_010--Hb_000261_370 Hb_168509_020 Hb_168509_020 Hb_013786_010--Hb_168509_020 Hb_013786_010--Hb_127661_010 Hb_127661_010--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_127661_010--Hb_000680_020 Hb_127661_010--Hb_000501_040 Hb_000116_330 Hb_000116_330 Hb_000417_250--Hb_000116_330 Hb_000417_250--Hb_000261_370 Hb_000417_250--Hb_000680_020 Hb_000417_250--Hb_127661_010 Hb_007420_010 Hb_007420_010 Hb_000501_040--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_000501_040--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000501_040--Hb_167272_010 Hb_023344_130 Hb_023344_130 Hb_000501_040--Hb_023344_130 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_000261_370--Hb_016637_020 Hb_003683_200 Hb_003683_200 Hb_000680_020--Hb_003683_200 Hb_002849_120 Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0230558 12.0924 8.9129 2.2515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042254 0.0332474 0.0315728 8.56658 8.3756

CAGE analysis