Hb_168509_020

Information

Type -
Description -
Location Contig168509: 18835-20535
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10570g
description POPTRDRAFT_831933; macrophage migration inhibitory factor family protein
nr
ID XP_002309164.1
description macrophage migration inhibitory factor family protein [Populus trichocarpa]
swissprot
ID P81748
description Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2
trembl
ID B9HD81
description Macrophage migration inhibitory factor family protein OS=Populus trichocarpa GN=POPTR_0006s10570g PE=4 SV=1
Gene Ontology
ID GO:0005777
description macrophage migration inhibitory factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15623: 18852-20475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168509_020 0.0 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
2 Hb_101034_020 0.1059252097 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
3 Hb_013786_010 0.1241777439 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_011038_020 0.1248049437 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000417_250 0.1387586486 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
6 Hb_094439_010 0.148409955 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
7 Hb_029576_100 0.1509221815 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
8 Hb_092458_010 0.1602580791 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_001918_030 0.1666625617 - - -
10 Hb_000261_370 0.1692549349 - - -
11 Hb_001427_220 0.1723248107 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
12 Hb_108551_010 0.1733727593 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010614_010 0.1754144181 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
14 Hb_000732_160 0.1826857482 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_003077_060 0.1841946315 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
16 Hb_005016_080 0.1857631913 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
17 Hb_009780_010 0.1912135538 - - conserved hypothetical protein [Ricinus communis]
18 Hb_136546_010 0.1941055989 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
19 Hb_127661_010 0.1972279904 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001388_020 0.1973717971 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]

Gene co-expression network

sample Hb_168509_020 Hb_168509_020 Hb_101034_020 Hb_101034_020 Hb_168509_020--Hb_101034_020 Hb_013786_010 Hb_013786_010 Hb_168509_020--Hb_013786_010 Hb_011038_020 Hb_011038_020 Hb_168509_020--Hb_011038_020 Hb_000417_250 Hb_000417_250 Hb_168509_020--Hb_000417_250 Hb_094439_010 Hb_094439_010 Hb_168509_020--Hb_094439_010 Hb_029576_100 Hb_029576_100 Hb_168509_020--Hb_029576_100 Hb_101034_020--Hb_011038_020 Hb_001427_220 Hb_001427_220 Hb_101034_020--Hb_001427_220 Hb_002279_020 Hb_002279_020 Hb_101034_020--Hb_002279_020 Hb_009780_010 Hb_009780_010 Hb_101034_020--Hb_009780_010 Hb_092458_010 Hb_092458_010 Hb_101034_020--Hb_092458_010 Hb_013786_010--Hb_029576_100 Hb_013786_010--Hb_000417_250 Hb_001388_020 Hb_001388_020 Hb_013786_010--Hb_001388_020 Hb_000261_370 Hb_000261_370 Hb_013786_010--Hb_000261_370 Hb_127661_010 Hb_127661_010 Hb_013786_010--Hb_127661_010 Hb_011038_020--Hb_009780_010 Hb_003062_020 Hb_003062_020 Hb_011038_020--Hb_003062_020 Hb_017098_020 Hb_017098_020 Hb_011038_020--Hb_017098_020 Hb_011038_020--Hb_013786_010 Hb_000417_250--Hb_029576_100 Hb_000116_330 Hb_000116_330 Hb_000417_250--Hb_000116_330 Hb_000417_250--Hb_000261_370 Hb_000680_020 Hb_000680_020 Hb_000417_250--Hb_000680_020 Hb_000417_250--Hb_127661_010 Hb_000732_160 Hb_000732_160 Hb_094439_010--Hb_000732_160 Hb_007113_020 Hb_007113_020 Hb_094439_010--Hb_007113_020 Hb_010614_010 Hb_010614_010 Hb_094439_010--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_094439_010--Hb_031685_010 Hb_029095_010 Hb_029095_010 Hb_094439_010--Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_094439_010--Hb_093364_010 Hb_029576_100--Hb_127661_010 Hb_000501_040 Hb_000501_040 Hb_029576_100--Hb_000501_040 Hb_029576_100--Hb_000261_370 Hb_029576_100--Hb_000680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.9514 17.4639 0.822177 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.142611 8.93292 8.67669

CAGE analysis