Hb_000417_250

Information

Type transcription factor
Description TF Family: WRKY
Location Contig417: 204782-206444
Sequence    

Annotation

kegg
ID rcu:RCOM_1250900
description WRKY transcription factor, putative
nr
ID XP_012091816.1
description PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
swissprot
ID Q9LP56
description Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1
trembl
ID S5CFV3
description Uncharacterized protein OS=Jatropha curcas GN=WRKY50 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41258: 204823-205828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_250 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
2 Hb_029576_100 0.085158699 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
3 Hb_013786_010 0.0963966718 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000116_330 0.1051573314 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_000261_370 0.1059810534 - - -
6 Hb_000680_020 0.1121239569 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_127661_010 0.1146932314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003683_200 0.115306988 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_004525_020 0.125573845 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
10 Hb_057321_010 0.1297147336 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_094439_010 0.1367130939 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
12 Hb_168509_020 0.1387586486 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
13 Hb_002849_120 0.1426957517 - - ferric reductase oxidase [Manihot esculenta]
14 Hb_007113_020 0.1430873328 - - -
15 Hb_001160_020 0.1504833452 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
16 Hb_001856_110 0.1511023587 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
17 Hb_001634_080 0.1564017626 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_016637_020 0.1575599068 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_000027_100 0.1575978047 - - hypothetical protein VITISV_039936 [Vitis vinifera]
20 Hb_000501_040 0.1588427692 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_250 Hb_000417_250 Hb_029576_100 Hb_029576_100 Hb_000417_250--Hb_029576_100 Hb_013786_010 Hb_013786_010 Hb_000417_250--Hb_013786_010 Hb_000116_330 Hb_000116_330 Hb_000417_250--Hb_000116_330 Hb_000261_370 Hb_000261_370 Hb_000417_250--Hb_000261_370 Hb_000680_020 Hb_000680_020 Hb_000417_250--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_000417_250--Hb_127661_010 Hb_029576_100--Hb_013786_010 Hb_029576_100--Hb_127661_010 Hb_000501_040 Hb_000501_040 Hb_029576_100--Hb_000501_040 Hb_029576_100--Hb_000261_370 Hb_029576_100--Hb_000680_020 Hb_001388_020 Hb_001388_020 Hb_013786_010--Hb_001388_020 Hb_013786_010--Hb_000261_370 Hb_168509_020 Hb_168509_020 Hb_013786_010--Hb_168509_020 Hb_013786_010--Hb_127661_010 Hb_003683_200 Hb_003683_200 Hb_000116_330--Hb_003683_200 Hb_004525_020 Hb_004525_020 Hb_000116_330--Hb_004525_020 Hb_001160_020 Hb_001160_020 Hb_000116_330--Hb_001160_020 Hb_000116_330--Hb_000680_020 Hb_000116_330--Hb_000261_370 Hb_000261_370--Hb_127661_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_005496_170 Hb_005496_170 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020 Hb_000680_020--Hb_003683_200 Hb_002849_120 Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_000680_020--Hb_127661_010 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_127661_010--Hb_016637_020 Hb_127661_010--Hb_005496_170 Hb_127661_010--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0948227 21.4633 18.7718 3.03873 0.0466361 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.256088 0.478615 14.5654 19.8869

CAGE analysis