Hb_007113_020

Information

Type -
Description -
Location Contig7113: 6560-13580
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55295: 6433-12822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007113_020 0.0 - - -
2 Hb_000261_370 0.082258106 - - -
3 Hb_001501_020 0.0874437794 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
4 Hb_006827_030 0.091128555 - - oligopeptide transporter, putative [Ricinus communis]
5 Hb_003849_030 0.0948020092 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
6 Hb_171168_010 0.0961582815 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_127661_010 0.0999039109 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_005496_170 0.1039377571 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
9 Hb_002849_120 0.1041269784 - - ferric reductase oxidase [Manihot esculenta]
10 Hb_094439_010 0.1060477705 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
11 Hb_001579_060 0.1159756319 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_002030_090 0.1179911454 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_000500_360 0.1186847266 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_000987_020 0.1200748978 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
15 Hb_007205_020 0.1201284576 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_003683_200 0.1224246483 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_000680_020 0.1252277049 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000049_170 0.1262178723 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003224_010 0.1272959947 - - -
20 Hb_093364_010 0.1299867598 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]

Gene co-expression network

sample Hb_007113_020 Hb_007113_020 Hb_000261_370 Hb_000261_370 Hb_007113_020--Hb_000261_370 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_006827_030 Hb_006827_030 Hb_007113_020--Hb_006827_030 Hb_003849_030 Hb_003849_030 Hb_007113_020--Hb_003849_030 Hb_171168_010 Hb_171168_010 Hb_007113_020--Hb_171168_010 Hb_127661_010 Hb_127661_010 Hb_007113_020--Hb_127661_010 Hb_000261_370--Hb_127661_010 Hb_029576_100 Hb_029576_100 Hb_000261_370--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020 Hb_000500_360 Hb_000500_360 Hb_001501_020--Hb_000500_360 Hb_002030_090 Hb_002030_090 Hb_001501_020--Hb_002030_090 Hb_001266_130 Hb_001266_130 Hb_001501_020--Hb_001266_130 Hb_001501_020--Hb_000261_370 Hb_003224_010 Hb_003224_010 Hb_001501_020--Hb_003224_010 Hb_001579_060 Hb_001579_060 Hb_006827_030--Hb_001579_060 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010 Hb_002849_120 Hb_002849_120 Hb_003849_030--Hb_002849_120 Hb_001160_020 Hb_001160_020 Hb_003849_030--Hb_001160_020 Hb_000046_430 Hb_000046_430 Hb_003849_030--Hb_000046_430 Hb_006970_170 Hb_006970_170 Hb_003849_030--Hb_006970_170 Hb_001153_090 Hb_001153_090 Hb_003849_030--Hb_001153_090 Hb_171168_010--Hb_001579_060 Hb_002155_020 Hb_002155_020 Hb_171168_010--Hb_002155_020 Hb_171168_010--Hb_002030_090 Hb_171168_010--Hb_000049_170 Hb_127661_010--Hb_016637_020 Hb_127661_010--Hb_029576_100 Hb_127661_010--Hb_005496_170 Hb_000680_020 Hb_000680_020 Hb_127661_010--Hb_000680_020 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.2099 0.296468 0.0961845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.17834 0.332093

CAGE analysis