Hb_003224_010

Information

Type -
Description -
Location Contig3224: 6899-11980
Sequence    

Annotation

kegg
ID pmum:103334945
description putative disease resistance protein At4g11170
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34130: 7196-7300 , PASA_asmbl_34131: 9059-9359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003224_010 0.0 - - -
2 Hb_000189_160 0.0754963624 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
3 Hb_005496_170 0.081270419 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
4 Hb_000046_430 0.0959953246 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
5 Hb_094148_010 0.1063979334 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
6 Hb_009554_030 0.1113009139 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
7 Hb_002503_050 0.1189212162 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_001501_020 0.1209431269 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
9 Hb_002601_140 0.1213428851 - - signal transducer, putative [Ricinus communis]
10 Hb_000261_370 0.122484036 - - -
11 Hb_017098_050 0.1228225934 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
12 Hb_004627_020 0.1229320394 - - Protein MLO, putative [Ricinus communis]
13 Hb_003849_030 0.124095793 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
14 Hb_007113_020 0.1272959947 - - -
15 Hb_000108_090 0.127526155 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
16 Hb_000866_190 0.1288947289 - - transcription factor, putative [Ricinus communis]
17 Hb_001634_080 0.1345940634 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_127661_010 0.1377441534 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_005523_050 0.1385754271 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
20 Hb_007205_020 0.1398533296 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_003224_010 Hb_003224_010 Hb_000189_160 Hb_000189_160 Hb_003224_010--Hb_000189_160 Hb_005496_170 Hb_005496_170 Hb_003224_010--Hb_005496_170 Hb_000046_430 Hb_000046_430 Hb_003224_010--Hb_000046_430 Hb_094148_010 Hb_094148_010 Hb_003224_010--Hb_094148_010 Hb_009554_030 Hb_009554_030 Hb_003224_010--Hb_009554_030 Hb_002503_050 Hb_002503_050 Hb_003224_010--Hb_002503_050 Hb_000189_160--Hb_000046_430 Hb_000189_160--Hb_002503_050 Hb_014250_010 Hb_014250_010 Hb_000189_160--Hb_014250_010 Hb_002601_140 Hb_002601_140 Hb_000189_160--Hb_002601_140 Hb_001135_010 Hb_001135_010 Hb_000189_160--Hb_001135_010 Hb_010880_010 Hb_010880_010 Hb_005496_170--Hb_010880_010 Hb_127661_010 Hb_127661_010 Hb_005496_170--Hb_127661_010 Hb_017098_050 Hb_017098_050 Hb_005496_170--Hb_017098_050 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_005496_170--Hb_016637_020 Hb_003849_030 Hb_003849_030 Hb_000046_430--Hb_003849_030 Hb_000689_010 Hb_000689_010 Hb_000046_430--Hb_000689_010 Hb_030982_050 Hb_030982_050 Hb_000046_430--Hb_030982_050 Hb_004611_050 Hb_004611_050 Hb_000046_430--Hb_004611_050 Hb_001565_010 Hb_001565_010 Hb_094148_010--Hb_001565_010 Hb_000108_090 Hb_000108_090 Hb_094148_010--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_094148_010--Hb_001634_080 Hb_094148_010--Hb_000261_370 Hb_170878_070 Hb_170878_070 Hb_094148_010--Hb_170878_070 Hb_004122_060 Hb_004122_060 Hb_009554_030--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_009554_030--Hb_059000_010 Hb_000096_210 Hb_000096_210 Hb_009554_030--Hb_000096_210 Hb_000866_190 Hb_000866_190 Hb_009554_030--Hb_000866_190 Hb_009554_030--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_009554_030--Hb_015306_010 Hb_002503_050--Hb_014250_010 Hb_001345_020 Hb_001345_020 Hb_002503_050--Hb_001345_020 Hb_002503_050--Hb_000046_430 Hb_000760_080 Hb_000760_080 Hb_002503_050--Hb_000760_080 Hb_002503_050--Hb_009554_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0863908 3.84657 7.20552 2.9897 0.0488799 0.0203876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209849 0.00825728 0.0158647 6.47147 6.17804

CAGE analysis