Hb_000108_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig108: 95076-96672
Sequence    

Annotation

kegg
ID tcc:TCM_024180
description Myb domain protein 5 isoform 1
nr
ID XP_012067087.1
description PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A067L4C7
description MYB family protein OS=Jatropha curcas GN=JCGZ_01881 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription repressor myb5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02385: 94947-95191 , PASA_asmbl_02386: 95305-96758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_090 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
2 Hb_001634_080 0.0367750368 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_107809_010 0.0864466163 - - JHL06P13.14 [Jatropha curcas]
4 Hb_001565_010 0.0897480405 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
5 Hb_005542_040 0.0902639222 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
6 Hb_007676_040 0.0944287989 - - cellulose synthase, putative [Ricinus communis]
7 Hb_094148_010 0.1042789302 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
8 Hb_000289_100 0.1073413308 - - carbonyl reductase, putative [Ricinus communis]
9 Hb_005276_220 0.1086297729 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
10 Hb_006788_100 0.1094533044 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
11 Hb_170878_050 0.1125367463 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
12 Hb_039022_020 0.1182800176 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
13 Hb_127661_010 0.1187587085 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000501_040 0.1189368985 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000521_360 0.1196490127 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
16 Hb_000261_370 0.1202999903 - - -
17 Hb_029576_100 0.1212292532 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
18 Hb_001345_010 0.123779614 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
19 Hb_000163_250 0.1265942784 - - unnamed protein product [Vitis vinifera]
20 Hb_005496_170 0.1269642424 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]

Gene co-expression network

sample Hb_000108_090 Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_000108_090--Hb_001634_080 Hb_107809_010 Hb_107809_010 Hb_000108_090--Hb_107809_010 Hb_001565_010 Hb_001565_010 Hb_000108_090--Hb_001565_010 Hb_005542_040 Hb_005542_040 Hb_000108_090--Hb_005542_040 Hb_007676_040 Hb_007676_040 Hb_000108_090--Hb_007676_040 Hb_094148_010 Hb_094148_010 Hb_000108_090--Hb_094148_010 Hb_001634_080--Hb_107809_010 Hb_001634_080--Hb_005542_040 Hb_127661_010 Hb_127661_010 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_001634_080--Hb_007676_040 Hb_107809_010--Hb_005542_040 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_005276_220 Hb_005276_220 Hb_107809_010--Hb_005276_220 Hb_000521_360 Hb_000521_360 Hb_107809_010--Hb_000521_360 Hb_001565_010--Hb_094148_010 Hb_001565_010--Hb_000521_360 Hb_004627_020 Hb_004627_020 Hb_001565_010--Hb_004627_020 Hb_001345_010 Hb_001345_010 Hb_001565_010--Hb_001345_010 Hb_001565_010--Hb_001634_080 Hb_005542_040--Hb_007676_040 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_007676_040--Hb_000521_360 Hb_003224_010 Hb_003224_010 Hb_094148_010--Hb_003224_010 Hb_094148_010--Hb_001634_080 Hb_000261_370 Hb_000261_370 Hb_094148_010--Hb_000261_370 Hb_170878_070 Hb_170878_070 Hb_094148_010--Hb_170878_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0442018 15.4965 16.0629 6.13108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0809794 0.0636998 0.0592544 21.9316 12.1295

CAGE analysis