Hb_007676_040

Information

Type -
Description -
Location Contig7676: 70443-72662
Sequence    

Annotation

kegg
ID rcu:RCOM_0522740
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID XP_002522779.1
description cellulose synthase, putative [Ricinus communis]
swissprot
ID Q8VZK9
description Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=2 SV=1
trembl
ID B9S9W0
description Cellulose synthase, putative OS=Ricinus communis GN=RCOM_0522740 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57470: 70674-71490 , PASA_asmbl_57471: 72515-92900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_040 0.0 - - cellulose synthase, putative [Ricinus communis]
2 Hb_005542_040 0.0823330581 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
3 Hb_001345_010 0.0839018811 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
4 Hb_000501_110 0.0914169435 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
5 Hb_000108_090 0.0944287989 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
6 Hb_001634_080 0.1017663655 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000521_360 0.1026080104 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
8 Hb_002960_010 0.107402066 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_001565_010 0.1074136831 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
10 Hb_107809_010 0.1095435726 - - JHL06P13.14 [Jatropha curcas]
11 Hb_002984_040 0.1173602826 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_094148_010 0.1238719112 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_005168_030 0.1331686169 - - unknown [Zea mays]
14 Hb_005276_220 0.1350622166 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
15 Hb_039022_020 0.1355924692 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_003842_010 0.140746065 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_000289_100 0.140982718 - - carbonyl reductase, putative [Ricinus communis]
18 Hb_011472_020 0.1447012707 - - PREDICTED: mucin-17-like [Jatropha curcas]
19 Hb_005614_030 0.1468468713 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
20 Hb_083412_010 0.1469038957 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_007676_040 Hb_007676_040 Hb_005542_040 Hb_005542_040 Hb_007676_040--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_000108_090 Hb_000108_090 Hb_007676_040--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_007676_040--Hb_001634_080 Hb_000521_360 Hb_000521_360 Hb_007676_040--Hb_000521_360 Hb_107809_010 Hb_107809_010 Hb_005542_040--Hb_107809_010 Hb_005276_220 Hb_005276_220 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_005542_040--Hb_000108_090 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_003842_010 Hb_003842_010 Hb_001345_010--Hb_003842_010 Hb_001345_010--Hb_000521_360 Hb_001345_010--Hb_005542_040 Hb_001565_010 Hb_001565_010 Hb_001345_010--Hb_001565_010 Hb_001345_010--Hb_005276_220 Hb_002984_040 Hb_002984_040 Hb_000501_110--Hb_002984_040 Hb_003881_020 Hb_003881_020 Hb_000501_110--Hb_003881_020 Hb_083412_010 Hb_083412_010 Hb_000501_110--Hb_083412_010 Hb_000501_110--Hb_005542_040 Hb_039022_020 Hb_039022_020 Hb_000501_110--Hb_039022_020 Hb_000108_090--Hb_001634_080 Hb_000108_090--Hb_107809_010 Hb_000108_090--Hb_001565_010 Hb_094148_010 Hb_094148_010 Hb_000108_090--Hb_094148_010 Hb_001634_080--Hb_107809_010 Hb_001634_080--Hb_005542_040 Hb_127661_010 Hb_127661_010 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_000521_360--Hb_107809_010 Hb_000521_360--Hb_005542_040 Hb_000521_360--Hb_001565_010 Hb_000521_360--Hb_005276_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116139 16.7228 26.379 6.19825 0.121894 0.0406914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0264227 0 0.0392596 35.3184 13.6458

CAGE analysis