Hb_003881_020

Information

Type -
Description -
Location Contig3881: 62259-63519
Sequence    

Annotation

kegg
ID rcu:RCOM_0614620
description Cucumber peeling cupredoxin, putative
nr
ID XP_012069323.1
description PREDICTED: stellacyanin-like [Jatropha curcas]
swissprot
ID Q9T076
description Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1
trembl
ID A0A067KW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03951 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38931: 62136-63563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003881_020 0.0 - - PREDICTED: stellacyanin-like [Jatropha curcas]
2 Hb_137272_010 0.0840048883 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
3 Hb_083412_010 0.0900308568 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_000567_060 0.0936041944 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
5 Hb_000482_070 0.1022697345 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
6 Hb_000501_110 0.1026482294 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
7 Hb_002984_040 0.1059109112 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002871_050 0.1080382674 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
9 Hb_002503_050 0.1194126761 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_005679_110 0.1198904352 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_000018_090 0.1201336529 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001349_020 0.1213205441 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
13 Hb_001345_020 0.1223665709 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
14 Hb_014250_010 0.1241659172 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
15 Hb_000096_210 0.1295259464 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
16 Hb_006681_030 0.131962506 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
17 Hb_033312_050 0.1324404321 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
18 Hb_022092_050 0.1329903595 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
19 Hb_039022_020 0.1336749543 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_001634_030 0.1349846753 - - Receptor like protein 1, putative [Theobroma cacao]

Gene co-expression network

sample Hb_003881_020 Hb_003881_020 Hb_137272_010 Hb_137272_010 Hb_003881_020--Hb_137272_010 Hb_083412_010 Hb_083412_010 Hb_003881_020--Hb_083412_010 Hb_000567_060 Hb_000567_060 Hb_003881_020--Hb_000567_060 Hb_000482_070 Hb_000482_070 Hb_003881_020--Hb_000482_070 Hb_000501_110 Hb_000501_110 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040 Hb_137272_010--Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_137272_010--Hb_000018_090 Hb_006266_010 Hb_006266_010 Hb_137272_010--Hb_006266_010 Hb_137272_010--Hb_000482_070 Hb_000189_160 Hb_000189_160 Hb_137272_010--Hb_000189_160 Hb_039022_020 Hb_039022_020 Hb_083412_010--Hb_039022_020 Hb_000096_210 Hb_000096_210 Hb_083412_010--Hb_000096_210 Hb_083412_010--Hb_000501_110 Hb_014250_010 Hb_014250_010 Hb_083412_010--Hb_014250_010 Hb_083412_010--Hb_137272_010 Hb_000567_060--Hb_000018_090 Hb_002871_050 Hb_002871_050 Hb_000567_060--Hb_002871_050 Hb_000567_060--Hb_000482_070 Hb_001345_020 Hb_001345_020 Hb_000567_060--Hb_001345_020 Hb_000482_070--Hb_000018_090 Hb_000482_070--Hb_002871_050 Hb_007747_160 Hb_007747_160 Hb_000482_070--Hb_007747_160 Hb_005679_110 Hb_005679_110 Hb_000482_070--Hb_005679_110 Hb_000501_110--Hb_002984_040 Hb_007676_040 Hb_007676_040 Hb_000501_110--Hb_007676_040 Hb_005542_040 Hb_005542_040 Hb_000501_110--Hb_005542_040 Hb_000501_110--Hb_039022_020 Hb_002984_040--Hb_007676_040 Hb_134174_010 Hb_134174_010 Hb_002984_040--Hb_134174_010 Hb_123560_020 Hb_123560_020 Hb_002984_040--Hb_123560_020 Hb_006294_030 Hb_006294_030 Hb_002984_040--Hb_006294_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178707 18.0989 40.9445 15.862 0.167889 0.119507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103807 0 0 29.7421 12.1199

CAGE analysis