Hb_002871_050

Information

Type transcription factor
Description TF Family: ARF
Location Contig2871: 103142-109570
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00890g
description auxin response factor 1 family protein
nr
ID XP_006385188.1
description auxin response factor 1 family protein [Populus trichocarpa]
swissprot
ID Q8L7G0
description Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2
trembl
ID U5GHK9
description Auxin response factor OS=Populus trichocarpa GN=POPTR_0003s00890g PE=3 SV=1
Gene Ontology
ID GO:0006355
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29940: 103227-104301 , PASA_asmbl_29941: 104662-105803 , PASA_asmbl_29942: 105338-105867 , PASA_asmbl_29943: 108198-109726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_050 0.0 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
2 Hb_000482_070 0.0775689304 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
3 Hb_005679_110 0.0781527513 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_000567_060 0.0949102877 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
5 Hb_000018_090 0.0980454811 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001832_240 0.1064182971 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
7 Hb_003881_020 0.1080382674 - - PREDICTED: stellacyanin-like [Jatropha curcas]
8 Hb_001454_290 0.1092899548 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
9 Hb_010164_020 0.112994867 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
10 Hb_001349_020 0.1154708199 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
11 Hb_001776_070 0.1220092358 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
12 Hb_001345_020 0.1229439607 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
13 Hb_001989_040 0.127371784 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
14 Hb_002774_180 0.1340137327 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_000096_210 0.135010519 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
16 Hb_000509_090 0.1380042258 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_002450_180 0.1407959881 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000946_050 0.1409254147 - - cytochrome P450, putative [Ricinus communis]
19 Hb_083412_010 0.1413431475 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_005628_050 0.1446001117 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002871_050 Hb_002871_050 Hb_000482_070 Hb_000482_070 Hb_002871_050--Hb_000482_070 Hb_005679_110 Hb_005679_110 Hb_002871_050--Hb_005679_110 Hb_000567_060 Hb_000567_060 Hb_002871_050--Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_002871_050--Hb_000018_090 Hb_001832_240 Hb_001832_240 Hb_002871_050--Hb_001832_240 Hb_003881_020 Hb_003881_020 Hb_002871_050--Hb_003881_020 Hb_000482_070--Hb_000018_090 Hb_007747_160 Hb_007747_160 Hb_000482_070--Hb_007747_160 Hb_000482_070--Hb_003881_020 Hb_000482_070--Hb_000567_060 Hb_000482_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_005679_110--Hb_001349_020 Hb_000696_030 Hb_000696_030 Hb_005679_110--Hb_000696_030 Hb_001776_070 Hb_001776_070 Hb_005679_110--Hb_001776_070 Hb_001345_020 Hb_001345_020 Hb_005679_110--Hb_001345_020 Hb_000567_060--Hb_000018_090 Hb_000567_060--Hb_003881_020 Hb_137272_010 Hb_137272_010 Hb_000567_060--Hb_137272_010 Hb_000567_060--Hb_001345_020 Hb_002774_180 Hb_002774_180 Hb_000018_090--Hb_002774_180 Hb_000018_090--Hb_137272_010 Hb_001776_130 Hb_001776_130 Hb_000018_090--Hb_001776_130 Hb_008080_030 Hb_008080_030 Hb_001832_240--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_001832_240--Hb_005628_050 Hb_000046_590 Hb_000046_590 Hb_001832_240--Hb_000046_590 Hb_001454_290 Hb_001454_290 Hb_001832_240--Hb_001454_290 Hb_001832_240--Hb_003881_020 Hb_003881_020--Hb_137272_010 Hb_083412_010 Hb_083412_010 Hb_003881_020--Hb_083412_010 Hb_000501_110 Hb_000501_110 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0602023 6.43711 12.2214 7.8144 0.0555751 0.0375441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188819 0.0148576 0 8.98397 2.11294

CAGE analysis