Hb_000482_070

Information

Type -
Description -
Location Contig482: 59269-61334
Sequence    

Annotation

kegg
ID rcu:RCOM_0797340
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012077281.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
swissprot
ID Q9M9C5
description Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1
trembl
ID A0A067KQJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07665 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44775: 57253-60444 , PASA_asmbl_44776: 58681-60444 , PASA_asmbl_44777: 60503-61036 , PASA_asmbl_44778: 61219-61405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_070 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
2 Hb_000018_090 0.0658058395 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002871_050 0.0775689304 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
4 Hb_007747_160 0.1005944556 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
5 Hb_003881_020 0.1022697345 - - PREDICTED: stellacyanin-like [Jatropha curcas]
6 Hb_000567_060 0.1024714242 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
7 Hb_005679_110 0.1079130904 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_137272_010 0.110328472 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
9 Hb_009476_070 0.1236354986 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
10 Hb_002774_180 0.1238900521 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_001776_130 0.1328264481 - - metallothionein [Hevea brasiliensis]
12 Hb_083412_010 0.1355421643 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_014250_010 0.1368515164 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
14 Hb_001345_020 0.1383254225 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
15 Hb_001638_150 0.1403709599 - - acyltransferase, putative [Ricinus communis]
16 Hb_005542_030 0.1405388268 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
17 Hb_000946_050 0.1407872896 - - cytochrome P450, putative [Ricinus communis]
18 Hb_004117_280 0.1411047843 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
19 Hb_001349_020 0.1480112084 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
20 Hb_001832_240 0.148309851 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000482_070 Hb_000482_070 Hb_000018_090 Hb_000018_090 Hb_000482_070--Hb_000018_090 Hb_002871_050 Hb_002871_050 Hb_000482_070--Hb_002871_050 Hb_007747_160 Hb_007747_160 Hb_000482_070--Hb_007747_160 Hb_003881_020 Hb_003881_020 Hb_000482_070--Hb_003881_020 Hb_000567_060 Hb_000567_060 Hb_000482_070--Hb_000567_060 Hb_005679_110 Hb_005679_110 Hb_000482_070--Hb_005679_110 Hb_000018_090--Hb_000567_060 Hb_000018_090--Hb_002871_050 Hb_002774_180 Hb_002774_180 Hb_000018_090--Hb_002774_180 Hb_137272_010 Hb_137272_010 Hb_000018_090--Hb_137272_010 Hb_001776_130 Hb_001776_130 Hb_000018_090--Hb_001776_130 Hb_002871_050--Hb_005679_110 Hb_002871_050--Hb_000567_060 Hb_001832_240 Hb_001832_240 Hb_002871_050--Hb_001832_240 Hb_002871_050--Hb_003881_020 Hb_009476_070 Hb_009476_070 Hb_007747_160--Hb_009476_070 Hb_008806_040 Hb_008806_040 Hb_007747_160--Hb_008806_040 Hb_007747_160--Hb_000018_090 Hb_004117_280 Hb_004117_280 Hb_007747_160--Hb_004117_280 Hb_007747_160--Hb_002774_180 Hb_003881_020--Hb_137272_010 Hb_083412_010 Hb_083412_010 Hb_003881_020--Hb_083412_010 Hb_003881_020--Hb_000567_060 Hb_000501_110 Hb_000501_110 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040 Hb_000567_060--Hb_137272_010 Hb_001345_020 Hb_001345_020 Hb_000567_060--Hb_001345_020 Hb_001349_020 Hb_001349_020 Hb_005679_110--Hb_001349_020 Hb_000696_030 Hb_000696_030 Hb_005679_110--Hb_000696_030 Hb_001776_070 Hb_001776_070 Hb_005679_110--Hb_001776_070 Hb_005679_110--Hb_001345_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0101086 1.91381 4.10823 2.24095 0.0473171 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.14364 0.9165

CAGE analysis