Hb_008806_040

Information

Type -
Description -
Location Contig8806: 29605-33606
Sequence    

Annotation

kegg
ID pop:POPTR_0223s00200g
description hypothetical protein
nr
ID XP_012081236.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID U7E0A1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0223s00200g PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61426: 30115-30808 , PASA_asmbl_61427: 31365-32268 , PASA_asmbl_61428: 32283-32655 , PASA_asmbl_61429: 33026-33688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008806_040 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_003747_250 0.0988882546 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
3 Hb_138086_010 0.1069939727 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_070634_010 0.1098163106 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_009476_070 0.1099262695 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
6 Hb_002774_180 0.1157038931 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_001989_040 0.1208918648 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
8 Hb_008749_010 0.1233639276 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
9 Hb_001562_030 0.1235741986 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
10 Hb_015037_010 0.1239710966 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
11 Hb_002888_100 0.1245598407 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
12 Hb_007747_160 0.1256320277 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_000163_180 0.1269997894 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
14 Hb_000365_180 0.1271923831 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
15 Hb_000010_440 0.1291052318 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
16 Hb_000152_170 0.1318690506 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
17 Hb_006120_210 0.1325784549 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_008406_070 0.1342002524 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
19 Hb_000411_020 0.1349279543 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000060_080 0.137943965 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008806_040 Hb_008806_040 Hb_003747_250 Hb_003747_250 Hb_008806_040--Hb_003747_250 Hb_138086_010 Hb_138086_010 Hb_008806_040--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_008806_040--Hb_070634_010 Hb_009476_070 Hb_009476_070 Hb_008806_040--Hb_009476_070 Hb_002774_180 Hb_002774_180 Hb_008806_040--Hb_002774_180 Hb_001989_040 Hb_001989_040 Hb_008806_040--Hb_001989_040 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_008749_010 Hb_008749_010 Hb_003747_250--Hb_008749_010 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_008406_070 Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_138086_010--Hb_009476_070 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_138086_010--Hb_070634_010 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_160653_010 Hb_160653_010 Hb_070634_010--Hb_160653_010 Hb_002676_110 Hb_002676_110 Hb_070634_010--Hb_002676_110 Hb_001430_010 Hb_001430_010 Hb_070634_010--Hb_001430_010 Hb_010721_010 Hb_010721_010 Hb_070634_010--Hb_010721_010 Hb_009476_070--Hb_000365_180 Hb_009476_070--Hb_008749_010 Hb_009476_070--Hb_002774_180 Hb_005463_070 Hb_005463_070 Hb_009476_070--Hb_005463_070 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160 Hb_000509_090 Hb_000509_090 Hb_001989_040--Hb_000509_090 Hb_000111_120 Hb_000111_120 Hb_001989_040--Hb_000111_120 Hb_001989_040--Hb_002774_180 Hb_010164_020 Hb_010164_020 Hb_001989_040--Hb_010164_020 Hb_004631_100 Hb_004631_100 Hb_001989_040--Hb_004631_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.51511 4.42402 3.98532 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133981 0.0105435 0 1.32926 0.765856

CAGE analysis