Hb_070634_010

Information

Type -
Description -
Location Contig70634: 17-757
Sequence    

Annotation

kegg
ID rcu:RCOM_1330160
description TMV resistance protein N, putative
nr
ID XP_002521765.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID P0DKH6
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID B9S6Z6
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1330160 PE=4 SV=1
Gene Ontology
ID GO:0043531
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55121: 274-754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070634_010 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_138086_010 0.1040784936 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_008806_040 0.1098163106 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
4 Hb_160653_010 0.1130028383 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_002676_110 0.1149343736 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
6 Hb_001430_010 0.1165299318 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
7 Hb_010721_010 0.121320403 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
8 Hb_001141_210 0.1214977011 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
9 Hb_015037_010 0.1225610376 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
10 Hb_002774_180 0.1252657299 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_009476_070 0.1282888578 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
12 Hb_023386_060 0.1320701106 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
13 Hb_001198_160 0.1379519341 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_011915_020 0.1395291148 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
15 Hb_004631_100 0.1421291314 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
16 Hb_008749_010 0.1427253017 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
17 Hb_000060_080 0.1433040161 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
18 Hb_177215_020 0.1450490218 - - acc synthase, putative [Ricinus communis]
19 Hb_000365_180 0.1451645156 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
20 Hb_002973_070 0.1453383835 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]

Gene co-expression network

sample Hb_070634_010 Hb_070634_010 Hb_138086_010 Hb_138086_010 Hb_070634_010--Hb_138086_010 Hb_008806_040 Hb_008806_040 Hb_070634_010--Hb_008806_040 Hb_160653_010 Hb_160653_010 Hb_070634_010--Hb_160653_010 Hb_002676_110 Hb_002676_110 Hb_070634_010--Hb_002676_110 Hb_001430_010 Hb_001430_010 Hb_070634_010--Hb_001430_010 Hb_010721_010 Hb_010721_010 Hb_070634_010--Hb_010721_010 Hb_008406_070 Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_003747_250 Hb_003747_250 Hb_008806_040--Hb_003747_250 Hb_008806_040--Hb_138086_010 Hb_008806_040--Hb_009476_070 Hb_002774_180 Hb_002774_180 Hb_008806_040--Hb_002774_180 Hb_001989_040 Hb_001989_040 Hb_008806_040--Hb_001989_040 Hb_028486_010 Hb_028486_010 Hb_160653_010--Hb_028486_010 Hb_160653_010--Hb_001430_010 Hb_003060_150 Hb_003060_150 Hb_160653_010--Hb_003060_150 Hb_001369_670 Hb_001369_670 Hb_160653_010--Hb_001369_670 Hb_001160_050 Hb_001160_050 Hb_160653_010--Hb_001160_050 Hb_001663_090 Hb_001663_090 Hb_002676_110--Hb_001663_090 Hb_076771_010 Hb_076771_010 Hb_002676_110--Hb_076771_010 Hb_000060_080 Hb_000060_080 Hb_002676_110--Hb_000060_080 Hb_004631_100 Hb_004631_100 Hb_002676_110--Hb_004631_100 Hb_002676_110--Hb_010721_010 Hb_001430_010--Hb_010721_010 Hb_015037_010 Hb_015037_010 Hb_001430_010--Hb_015037_010 Hb_011915_020 Hb_011915_020 Hb_001430_010--Hb_011915_020 Hb_023386_060 Hb_023386_060 Hb_001430_010--Hb_023386_060 Hb_002048_100 Hb_002048_100 Hb_001430_010--Hb_002048_100 Hb_010721_010--Hb_023386_060 Hb_002048_070 Hb_002048_070 Hb_010721_010--Hb_002048_070 Hb_010721_010--Hb_011915_020 Hb_010721_010--Hb_001663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0805641 1.70079 2.30991 1.82198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.569901 0.286286

CAGE analysis