Hb_004631_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4631: 78929-80060
Sequence    

Annotation

kegg
ID tcc:TCM_001031
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012081726.1
description PREDICTED: transcription factor bHLH96 [Jatropha curcas]
swissprot
ID Q9C7T4
description Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1
trembl
ID A0A067K3Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18668 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh94-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43859: 79598-80028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_100 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
2 Hb_002676_110 0.0979791592 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
3 Hb_033053_020 0.0997433708 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
4 Hb_000060_080 0.1052627245 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
5 Hb_002888_100 0.1087456942 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
6 Hb_004659_100 0.1108981889 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000111_120 0.1110891685 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_000631_100 0.1168383451 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
9 Hb_028841_010 0.117436058 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
10 Hb_000509_090 0.1178895268 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_170632_010 0.1225046297 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_001562_030 0.1241626549 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
13 Hb_001989_040 0.1268576785 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
14 Hb_002325_050 0.1307645058 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
15 Hb_010573_040 0.1311518469 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
16 Hb_087427_010 0.1332666054 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
17 Hb_001198_180 0.1372710892 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
18 Hb_008959_050 0.1390896939 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
19 Hb_008806_040 0.1416270792 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_038718_010 0.1416773765 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004631_100 Hb_004631_100 Hb_002676_110 Hb_002676_110 Hb_004631_100--Hb_002676_110 Hb_033053_020 Hb_033053_020 Hb_004631_100--Hb_033053_020 Hb_000060_080 Hb_000060_080 Hb_004631_100--Hb_000060_080 Hb_002888_100 Hb_002888_100 Hb_004631_100--Hb_002888_100 Hb_004659_100 Hb_004659_100 Hb_004631_100--Hb_004659_100 Hb_000111_120 Hb_000111_120 Hb_004631_100--Hb_000111_120 Hb_001663_090 Hb_001663_090 Hb_002676_110--Hb_001663_090 Hb_076771_010 Hb_076771_010 Hb_002676_110--Hb_076771_010 Hb_002676_110--Hb_000060_080 Hb_010721_010 Hb_010721_010 Hb_002676_110--Hb_010721_010 Hb_070634_010 Hb_070634_010 Hb_002676_110--Hb_070634_010 Hb_033053_020--Hb_004659_100 Hb_087427_010 Hb_087427_010 Hb_033053_020--Hb_087427_010 Hb_000631_100 Hb_000631_100 Hb_033053_020--Hb_000631_100 Hb_038718_010 Hb_038718_010 Hb_033053_020--Hb_038718_010 Hb_008021_040 Hb_008021_040 Hb_033053_020--Hb_008021_040 Hb_170632_010 Hb_170632_010 Hb_000060_080--Hb_170632_010 Hb_000060_080--Hb_001663_090 Hb_001562_030 Hb_001562_030 Hb_000060_080--Hb_001562_030 Hb_000975_090 Hb_000975_090 Hb_000060_080--Hb_000975_090 Hb_002888_100--Hb_001562_030 Hb_012787_060 Hb_012787_060 Hb_002888_100--Hb_012787_060 Hb_000098_260 Hb_000098_260 Hb_002888_100--Hb_000098_260 Hb_001048_070 Hb_001048_070 Hb_002888_100--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_002888_100--Hb_008725_020 Hb_004634_030 Hb_004634_030 Hb_002888_100--Hb_004634_030 Hb_009627_020 Hb_009627_020 Hb_004659_100--Hb_009627_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_024868_010 Hb_024868_010 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_009838_120 Hb_009838_120 Hb_004659_100--Hb_009838_120 Hb_000509_090 Hb_000509_090 Hb_000111_120--Hb_000509_090 Hb_001989_040 Hb_001989_040 Hb_000111_120--Hb_001989_040 Hb_010164_020 Hb_010164_020 Hb_000111_120--Hb_010164_020 Hb_000111_120--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_000111_120--Hb_001776_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240136 1.44554 1.45831 2.0828 0.0240972 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.88968 0.176306

CAGE analysis