Hb_001989_040

Information

Type -
Description -
Location Contig1989: 94532-97059
Sequence    

Annotation

kegg
ID rcu:RCOM_0757020
description copper ion binding protein, putative
nr
ID XP_012072816.1
description PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID A0A067L0F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08265 PE=4 SV=1
Gene Ontology
ID GO:0046872
description neurofilament heavy polypeptide

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19946: 94699-96916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_040 0.0 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
2 Hb_000509_090 0.0463323939 - - Reticuline oxidase precursor, putative [Ricinus communis]
3 Hb_000111_120 0.0885190891 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_008806_040 0.1208918648 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_002774_180 0.1238353542 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_010164_020 0.1255280052 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
7 Hb_004631_100 0.1268576785 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
8 Hb_133508_020 0.1269954898 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_002871_050 0.127371784 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
10 Hb_000631_100 0.1304724833 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
11 Hb_013358_030 0.1330504279 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
12 Hb_001776_070 0.1357871772 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
13 Hb_000411_020 0.1358035534 - - cytochrome P450, putative [Ricinus communis]
14 Hb_003875_040 0.1374593116 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
15 Hb_006916_120 0.1405015286 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
16 Hb_000018_090 0.1455021484 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_003878_020 0.14628488 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
18 Hb_185830_090 0.1486559506 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003050_170 0.1504431615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004785_160 0.1513483525 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]

Gene co-expression network

sample Hb_001989_040 Hb_001989_040 Hb_000509_090 Hb_000509_090 Hb_001989_040--Hb_000509_090 Hb_000111_120 Hb_000111_120 Hb_001989_040--Hb_000111_120 Hb_008806_040 Hb_008806_040 Hb_001989_040--Hb_008806_040 Hb_002774_180 Hb_002774_180 Hb_001989_040--Hb_002774_180 Hb_010164_020 Hb_010164_020 Hb_001989_040--Hb_010164_020 Hb_004631_100 Hb_004631_100 Hb_001989_040--Hb_004631_100 Hb_000509_090--Hb_000111_120 Hb_000509_090--Hb_004631_100 Hb_000509_090--Hb_010164_020 Hb_133508_020 Hb_133508_020 Hb_000509_090--Hb_133508_020 Hb_000509_090--Hb_002774_180 Hb_000111_120--Hb_004631_100 Hb_000111_120--Hb_010164_020 Hb_000631_100 Hb_000631_100 Hb_000111_120--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_000111_120--Hb_001776_070 Hb_003747_250 Hb_003747_250 Hb_008806_040--Hb_003747_250 Hb_138086_010 Hb_138086_010 Hb_008806_040--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_008806_040--Hb_070634_010 Hb_009476_070 Hb_009476_070 Hb_008806_040--Hb_009476_070 Hb_008806_040--Hb_002774_180 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_002774_180--Hb_009476_070 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160 Hb_010164_020--Hb_001776_070 Hb_000479_230 Hb_000479_230 Hb_010164_020--Hb_000479_230 Hb_002871_050 Hb_002871_050 Hb_010164_020--Hb_002871_050 Hb_011129_020 Hb_011129_020 Hb_010164_020--Hb_011129_020 Hb_002676_110 Hb_002676_110 Hb_004631_100--Hb_002676_110 Hb_033053_020 Hb_033053_020 Hb_004631_100--Hb_033053_020 Hb_000060_080 Hb_000060_080 Hb_004631_100--Hb_000060_080 Hb_002888_100 Hb_002888_100 Hb_004631_100--Hb_002888_100 Hb_004659_100 Hb_004659_100 Hb_004631_100--Hb_004659_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177709 61.1772 123.451 111.599 0.0119122 0.0838806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115847 0.091143 0.257482 65.0923 8.65093

CAGE analysis