Hb_002973_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2973: 94232-95954
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03620g
description WRKY transcription factor 40 family protein
nr
ID XP_012067500.1
description PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
swissprot
ID Q9SAH7
description Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1
trembl
ID S5CKF6
description Uncharacterized protein OS=Jatropha curcas GN=WRKY27 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31139: 94394-95908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_070 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
2 Hb_004785_160 0.0876317666 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
3 Hb_002774_180 0.0995307963 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_001141_210 0.1110015572 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
5 Hb_001971_030 0.1120196817 - - PREDICTED: exonuclease 1 [Jatropha curcas]
6 Hb_000031_160 0.1239225706 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
7 Hb_004544_010 0.124400237 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
8 Hb_008725_030 0.1323434565 - - conserved hypothetical protein [Ricinus communis]
9 Hb_043522_010 0.1345538995 - - -
10 Hb_001619_020 0.1398900148 - - LRR receptor-like kinase family protein [Medicago truncatula]
11 Hb_000771_040 0.1424515781 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
12 Hb_138086_010 0.1441737994 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_070634_010 0.1453383835 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_000110_030 0.1455453498 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_023386_060 0.1484283897 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
16 Hb_001635_230 0.1520731719 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_042098_010 0.1584298404 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_001989_040 0.1585570518 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
19 Hb_160653_010 0.1600203143 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_000465_350 0.1607958931 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002973_070 Hb_002973_070 Hb_004785_160 Hb_004785_160 Hb_002973_070--Hb_004785_160 Hb_002774_180 Hb_002774_180 Hb_002973_070--Hb_002774_180 Hb_001141_210 Hb_001141_210 Hb_002973_070--Hb_001141_210 Hb_001971_030 Hb_001971_030 Hb_002973_070--Hb_001971_030 Hb_000031_160 Hb_000031_160 Hb_002973_070--Hb_000031_160 Hb_004544_010 Hb_004544_010 Hb_002973_070--Hb_004544_010 Hb_000110_030 Hb_000110_030 Hb_004785_160--Hb_000110_030 Hb_004785_160--Hb_004544_010 Hb_004785_160--Hb_001141_210 Hb_004785_160--Hb_000031_160 Hb_043522_010 Hb_043522_010 Hb_004785_160--Hb_043522_010 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_002774_180--Hb_004785_160 Hb_001141_210--Hb_000031_160 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_001971_030--Hb_000771_040 Hb_000483_050 Hb_000483_050 Hb_001971_030--Hb_000483_050 Hb_008948_070 Hb_008948_070 Hb_001971_030--Hb_008948_070 Hb_001971_030--Hb_002774_180 Hb_008725_030 Hb_008725_030 Hb_001971_030--Hb_008725_030 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_005628_050 Hb_005628_050 Hb_000031_160--Hb_005628_050 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_004544_010--Hb_043522_010 Hb_004544_010--Hb_008725_030 Hb_004544_010--Hb_001971_030 Hb_004544_010--Hb_000110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 17.8763 23.615 13.3438 0.0146077 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0355697 0.0559636 0.57563 7.686 1.10666

CAGE analysis