Hb_001971_030

Information

Type -
Description -
Location Contig1971: 49795-54138
Sequence    

Annotation

kegg
ID rcu:RCOM_0570820
description exonuclease, putative
nr
ID XP_012068457.1
description PREDICTED: exonuclease 1 [Jatropha curcas]
swissprot
ID Q8L6Z7
description Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2
trembl
ID A0A067L1M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03614 PE=4 SV=1
Gene Ontology
ID GO:0005634
description exonuclease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19798: 46764-48844 , PASA_asmbl_19799: 51501-52277 , PASA_asmbl_19800: 52486-52635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_030 0.0 - - PREDICTED: exonuclease 1 [Jatropha curcas]
2 Hb_000771_040 0.1042984897 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
3 Hb_000483_050 0.1055186862 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
4 Hb_002973_070 0.1120196817 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
5 Hb_008948_070 0.1202587659 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
6 Hb_002774_180 0.1228707561 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_008725_030 0.1229312727 - - conserved hypothetical protein [Ricinus communis]
8 Hb_096974_010 0.1307266686 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
9 Hb_160653_010 0.1326420653 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_004544_010 0.1339537199 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
11 Hb_043522_010 0.1369701091 - - -
12 Hb_000365_110 0.141696471 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
13 Hb_001581_040 0.1417697325 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_017693_040 0.1424970609 - - tyrosine kinase family protein [Medicago truncatula]
15 Hb_000656_120 0.1444990419 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
16 Hb_004297_050 0.1456558251 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004785_160 0.1462181391 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
18 Hb_001141_210 0.1484791582 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
19 Hb_001635_230 0.1547488775 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_042098_010 0.1578004565 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001971_030 Hb_001971_030 Hb_000771_040 Hb_000771_040 Hb_001971_030--Hb_000771_040 Hb_000483_050 Hb_000483_050 Hb_001971_030--Hb_000483_050 Hb_002973_070 Hb_002973_070 Hb_001971_030--Hb_002973_070 Hb_008948_070 Hb_008948_070 Hb_001971_030--Hb_008948_070 Hb_002774_180 Hb_002774_180 Hb_001971_030--Hb_002774_180 Hb_008725_030 Hb_008725_030 Hb_001971_030--Hb_008725_030 Hb_001581_040 Hb_001581_040 Hb_000771_040--Hb_001581_040 Hb_009907_020 Hb_009907_020 Hb_000771_040--Hb_009907_020 Hb_000771_040--Hb_002774_180 Hb_000111_240 Hb_000111_240 Hb_000771_040--Hb_000111_240 Hb_160653_010 Hb_160653_010 Hb_000771_040--Hb_160653_010 Hb_000365_110 Hb_000365_110 Hb_000483_050--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000483_050--Hb_000574_270 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_150745_010 Hb_150745_010 Hb_000483_050--Hb_150745_010 Hb_000953_180 Hb_000953_180 Hb_000483_050--Hb_000953_180 Hb_004785_160 Hb_004785_160 Hb_002973_070--Hb_004785_160 Hb_002973_070--Hb_002774_180 Hb_001141_210 Hb_001141_210 Hb_002973_070--Hb_001141_210 Hb_000031_160 Hb_000031_160 Hb_002973_070--Hb_000031_160 Hb_004544_010 Hb_004544_010 Hb_002973_070--Hb_004544_010 Hb_001846_030 Hb_001846_030 Hb_008948_070--Hb_001846_030 Hb_008948_070--Hb_000953_180 Hb_000192_030 Hb_000192_030 Hb_008948_070--Hb_000192_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_006478_140 Hb_006478_140 Hb_008948_070--Hb_006478_140 Hb_008948_070--Hb_000365_110 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_002774_180--Hb_001141_210 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_002774_180--Hb_004785_160 Hb_003968_010 Hb_003968_010 Hb_008725_030--Hb_003968_010 Hb_008725_030--Hb_096974_010 Hb_008725_030--Hb_004544_010 Hb_043522_010 Hb_043522_010 Hb_008725_030--Hb_043522_010 Hb_003050_170 Hb_003050_170 Hb_008725_030--Hb_003050_170 Hb_004297_050 Hb_004297_050 Hb_008725_030--Hb_004297_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07916 1.85692 0.757601 0 0.0118371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.369239 0.0452743

CAGE analysis