Hb_000192_030

Information

Type -
Description -
Location Contig192: 22636-31277
Sequence    

Annotation

kegg
ID zma:542240
description tbp1; TATA-binding protein1
nr
ID XP_012698606.1
description PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
swissprot
ID P50158
description TATA-box-binding protein 1 OS=Zea mays GN=TBP1 PE=2 SV=1
trembl
ID A0A0E0M7Y0
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0005634
description tata-box-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000192_030 0.0 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
2 Hb_000953_180 0.0539521429 - - -
3 Hb_100395_010 0.058545562 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_010223_010 0.0992631426 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_000365_110 0.0994537125 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
6 Hb_008948_070 0.1018659968 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
7 Hb_107174_010 0.1067203849 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_021142_030 0.112498611 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_007894_040 0.1128352414 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
10 Hb_012400_020 0.1165366933 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_000574_270 0.1196728763 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
12 Hb_007747_070 0.1245780241 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
13 Hb_012146_010 0.1250577289 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
14 Hb_032071_010 0.1260853827 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
15 Hb_000592_070 0.1280097249 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
16 Hb_000997_130 0.1285644275 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001846_030 0.1304910097 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
18 Hb_009385_010 0.1307616016 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
19 Hb_002999_150 0.1327770149 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
20 Hb_001410_040 0.1369162901 - - Protein ABIL2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000192_030 Hb_000192_030 Hb_000953_180 Hb_000953_180 Hb_000192_030--Hb_000953_180 Hb_100395_010 Hb_100395_010 Hb_000192_030--Hb_100395_010 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000365_110 Hb_000365_110 Hb_000192_030--Hb_000365_110 Hb_008948_070 Hb_008948_070 Hb_000192_030--Hb_008948_070 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_000953_180--Hb_100395_010 Hb_000953_180--Hb_008948_070 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_021142_030 Hb_021142_030 Hb_100395_010--Hb_021142_030 Hb_100395_010--Hb_000365_110 Hb_009385_010 Hb_009385_010 Hb_100395_010--Hb_009385_010 Hb_001410_040 Hb_001410_040 Hb_100395_010--Hb_001410_040 Hb_010223_010--Hb_107174_010 Hb_000997_130 Hb_000997_130 Hb_010223_010--Hb_000997_130 Hb_008651_010 Hb_008651_010 Hb_010223_010--Hb_008651_010 Hb_002999_150 Hb_002999_150 Hb_010223_010--Hb_002999_150 Hb_032071_010 Hb_032071_010 Hb_010223_010--Hb_032071_010 Hb_000365_110--Hb_000574_270 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_008948_070 Hb_001846_030 Hb_001846_030 Hb_008948_070--Hb_001846_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_006478_140 Hb_006478_140 Hb_008948_070--Hb_006478_140 Hb_107174_010--Hb_002999_150 Hb_003207_220 Hb_003207_220 Hb_107174_010--Hb_003207_220 Hb_007894_040 Hb_007894_040 Hb_107174_010--Hb_007894_040 Hb_071654_010 Hb_071654_010 Hb_107174_010--Hb_071654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.317157 0.599314 0.150854 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0149472 0

CAGE analysis