Hb_000953_180

Information

Type -
Description -
Location Contig953: 204283-204912
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_180 0.0 - - -
2 Hb_000192_030 0.0539521429 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
3 Hb_000365_110 0.0652365251 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
4 Hb_000574_270 0.0711156581 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
5 Hb_100395_010 0.0816347195 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_008948_070 0.0923832435 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
7 Hb_000483_050 0.1219745626 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
8 Hb_006478_140 0.1238708957 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
9 Hb_127372_010 0.126403948 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
10 Hb_008115_030 0.1287578818 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
11 Hb_107174_010 0.1300316395 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_007894_040 0.1304766243 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
13 Hb_012146_010 0.1368037586 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
14 Hb_010223_010 0.1389626748 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
15 Hb_001846_030 0.1390519973 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
16 Hb_021142_030 0.1401174898 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_002999_150 0.1412056677 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
18 Hb_007747_070 0.1427876667 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
19 Hb_071654_010 0.1467607957 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
20 Hb_055877_010 0.148348761 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_180 Hb_000953_180 Hb_000192_030 Hb_000192_030 Hb_000953_180--Hb_000192_030 Hb_000365_110 Hb_000365_110 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_100395_010 Hb_100395_010 Hb_000953_180--Hb_100395_010 Hb_008948_070 Hb_008948_070 Hb_000953_180--Hb_008948_070 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_000192_030--Hb_100395_010 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000192_030--Hb_000365_110 Hb_000192_030--Hb_008948_070 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_000365_110--Hb_000574_270 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_100395_010 Hb_000365_110--Hb_008948_070 Hb_000574_270--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000574_270--Hb_150745_010 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_021142_030 Hb_021142_030 Hb_100395_010--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_100395_010--Hb_009385_010 Hb_001410_040 Hb_001410_040 Hb_100395_010--Hb_001410_040 Hb_001846_030 Hb_001846_030 Hb_008948_070--Hb_001846_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_006478_140 Hb_006478_140 Hb_008948_070--Hb_006478_140 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_000483_050--Hb_150745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.379614 0.857684 0.193926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0411231 0

CAGE analysis