Hb_000656_120

Information

Type transcription factor
Description TF Family: Tify
Location Contig656: 72596-74306
Sequence    

Annotation

kegg
ID rcu:RCOM_0684970
description hypothetical protein
nr
ID AIY25007.1
description JAZ2 [Hevea brasiliensis]
swissprot
ID Q9LMA8
description Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1
trembl
ID A0A0B4RUR8
description JAZ2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52715: 72771-74237 , PASA_asmbl_52716: 73208-73480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_120 0.0 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
2 Hb_000483_050 0.1077542321 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
3 Hb_150745_010 0.1284319378 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
4 Hb_002045_260 0.1332828834 - - calmodulin, putative [Ricinus communis]
5 Hb_011849_030 0.138388488 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001159_220 0.1384717556 - - ESC, putative [Ricinus communis]
7 Hb_001005_170 0.143287006 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_001971_030 0.1444990419 - - PREDICTED: exonuclease 1 [Jatropha curcas]
9 Hb_001581_040 0.1488221872 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_003226_060 0.1572969895 - - Pectinesterase-2 precursor, putative [Ricinus communis]
11 Hb_002157_100 0.1586083668 - - -
12 Hb_007017_110 0.1588056056 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_000771_040 0.158820526 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
14 Hb_002774_180 0.1619509799 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_000397_170 0.164299018 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007101_250 0.1646500773 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
17 Hb_042098_010 0.1652447038 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_001754_100 0.167623816 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
19 Hb_002995_010 0.1690967087 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
20 Hb_005375_060 0.1692044766 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_120 Hb_000656_120 Hb_000483_050 Hb_000483_050 Hb_000656_120--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000656_120--Hb_150745_010 Hb_002045_260 Hb_002045_260 Hb_000656_120--Hb_002045_260 Hb_011849_030 Hb_011849_030 Hb_000656_120--Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_000656_120--Hb_001159_220 Hb_001005_170 Hb_001005_170 Hb_000656_120--Hb_001005_170 Hb_000365_110 Hb_000365_110 Hb_000483_050--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000483_050--Hb_000574_270 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000483_050--Hb_150745_010 Hb_000953_180 Hb_000953_180 Hb_000483_050--Hb_000953_180 Hb_001754_100 Hb_001754_100 Hb_150745_010--Hb_001754_100 Hb_000413_220 Hb_000413_220 Hb_150745_010--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_150745_010--Hb_000574_180 Hb_000397_170 Hb_000397_170 Hb_150745_010--Hb_000397_170 Hb_150745_010--Hb_000574_270 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_042098_010 Hb_042098_010 Hb_002045_260--Hb_042098_010 Hb_002374_360 Hb_002374_360 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_011849_030--Hb_001159_220 Hb_001649_050 Hb_001649_050 Hb_011849_030--Hb_001649_050 Hb_005306_030 Hb_005306_030 Hb_011849_030--Hb_005306_030 Hb_004607_020 Hb_004607_020 Hb_011849_030--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_001159_220--Hb_005306_030 Hb_001159_220--Hb_001649_050 Hb_000103_460 Hb_000103_460 Hb_001159_220--Hb_000103_460 Hb_004316_080 Hb_004316_080 Hb_001159_220--Hb_004316_080 Hb_001288_020 Hb_001288_020 Hb_001005_170--Hb_001288_020 Hb_001862_160 Hb_001862_160 Hb_001005_170--Hb_001862_160 Hb_004096_010 Hb_004096_010 Hb_001005_170--Hb_004096_010 Hb_003413_020 Hb_003413_020 Hb_001005_170--Hb_003413_020 Hb_000563_180 Hb_000563_180 Hb_001005_170--Hb_000563_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.6148 63.5571 17.7335 0.0971772 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0455174 0.250614 0 16.6826 1.03145

CAGE analysis