Hb_000574_180

Information

Type -
Description -
Location Contig574: 122260-159860
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012073431.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_180 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_000413_220 0.0411329355 - - PREDICTED: kinesin-1 [Jatropha curcas]
3 Hb_000256_170 0.0464185818 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
4 Hb_000739_250 0.0925801382 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
5 Hb_000668_190 0.095253605 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
6 Hb_000397_170 0.0984786856 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001754_100 0.1026575839 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
8 Hb_150745_010 0.1059588519 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
9 Hb_003226_060 0.1115413733 - - Pectinesterase-2 precursor, putative [Ricinus communis]
10 Hb_000574_270 0.1326946726 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
11 Hb_000331_020 0.1425901918 - - cytochrome P450, putative [Ricinus communis]
12 Hb_005649_070 0.1432425237 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004241_140 0.1474454558 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
14 Hb_005141_020 0.1475647336 - - laccase, putative [Ricinus communis]
15 Hb_004586_050 0.1522396014 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
16 Hb_000261_340 0.1546573871 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_002486_090 0.1549727213 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
18 Hb_002534_040 0.1550000011 - - Calmodulin, putative [Ricinus communis]
19 Hb_000045_290 0.155685825 - - -
20 Hb_169753_010 0.1568731337 - - hypothetical protein JCGZ_18439 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_180 Hb_000574_180 Hb_000413_220 Hb_000413_220 Hb_000574_180--Hb_000413_220 Hb_000256_170 Hb_000256_170 Hb_000574_180--Hb_000256_170 Hb_000739_250 Hb_000739_250 Hb_000574_180--Hb_000739_250 Hb_000668_190 Hb_000668_190 Hb_000574_180--Hb_000668_190 Hb_000397_170 Hb_000397_170 Hb_000574_180--Hb_000397_170 Hb_001754_100 Hb_001754_100 Hb_000574_180--Hb_001754_100 Hb_000413_220--Hb_000668_190 Hb_000413_220--Hb_000256_170 Hb_000413_220--Hb_000739_250 Hb_150745_010 Hb_150745_010 Hb_000413_220--Hb_150745_010 Hb_000413_220--Hb_001754_100 Hb_000256_170--Hb_000739_250 Hb_000331_020 Hb_000331_020 Hb_000256_170--Hb_000331_020 Hb_000256_170--Hb_000397_170 Hb_000256_170--Hb_000668_190 Hb_000739_250--Hb_000668_190 Hb_002486_090 Hb_002486_090 Hb_000739_250--Hb_002486_090 Hb_005141_020 Hb_005141_020 Hb_000739_250--Hb_005141_020 Hb_002534_040 Hb_002534_040 Hb_000668_190--Hb_002534_040 Hb_000164_030 Hb_000164_030 Hb_000668_190--Hb_000164_030 Hb_002435_010 Hb_002435_010 Hb_000668_190--Hb_002435_010 Hb_003226_060 Hb_003226_060 Hb_000397_170--Hb_003226_060 Hb_000397_170--Hb_001754_100 Hb_005599_010 Hb_005599_010 Hb_000397_170--Hb_005599_010 Hb_000397_170--Hb_150745_010 Hb_001754_100--Hb_150745_010 Hb_001754_100--Hb_003226_060 Hb_001754_100--Hb_000256_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0100447 0.0743825 0.0217173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00430922 0

CAGE analysis