Hb_000739_250

Information

Type -
Description -
Location Contig739: 221694-222147
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15060g
description POPTRDRAFT_850197; hypothetical protein
nr
ID XP_011017507.1
description PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GPI2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15060g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56298: 221687-222143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_250 0.0 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
2 Hb_000413_220 0.0872688597 - - PREDICTED: kinesin-1 [Jatropha curcas]
3 Hb_000574_180 0.0925801382 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_000256_170 0.0928797776 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
5 Hb_000668_190 0.0950771427 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
6 Hb_002486_090 0.1132966821 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
7 Hb_005141_020 0.1181471708 - - laccase, putative [Ricinus communis]
8 Hb_006142_020 0.1249770812 - - JHL25P11.12 [Jatropha curcas]
9 Hb_064971_010 0.1319982429 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_108744_010 0.1338011875 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_000157_060 0.1355922623 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
12 Hb_002534_040 0.1395915333 - - Calmodulin, putative [Ricinus communis]
13 Hb_000164_030 0.140003259 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
14 Hb_000756_030 0.1448580789 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_005649_070 0.1493651316 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000347_160 0.1517071439 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
17 Hb_003018_210 0.1519360515 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
18 Hb_005649_050 0.1521176813 - - conserved hypothetical protein [Ricinus communis]
19 Hb_152528_010 0.1523802352 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_001754_100 0.1537805833 - - PREDICTED: peroxidase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000739_250 Hb_000739_250 Hb_000413_220 Hb_000413_220 Hb_000739_250--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_000739_250--Hb_000574_180 Hb_000256_170 Hb_000256_170 Hb_000739_250--Hb_000256_170 Hb_000668_190 Hb_000668_190 Hb_000739_250--Hb_000668_190 Hb_002486_090 Hb_002486_090 Hb_000739_250--Hb_002486_090 Hb_005141_020 Hb_005141_020 Hb_000739_250--Hb_005141_020 Hb_000413_220--Hb_000574_180 Hb_000413_220--Hb_000668_190 Hb_000413_220--Hb_000256_170 Hb_150745_010 Hb_150745_010 Hb_000413_220--Hb_150745_010 Hb_001754_100 Hb_001754_100 Hb_000413_220--Hb_001754_100 Hb_000574_180--Hb_000256_170 Hb_000574_180--Hb_000668_190 Hb_000397_170 Hb_000397_170 Hb_000574_180--Hb_000397_170 Hb_000574_180--Hb_001754_100 Hb_000331_020 Hb_000331_020 Hb_000256_170--Hb_000331_020 Hb_000256_170--Hb_000397_170 Hb_000256_170--Hb_000668_190 Hb_002534_040 Hb_002534_040 Hb_000668_190--Hb_002534_040 Hb_000164_030 Hb_000164_030 Hb_000668_190--Hb_000164_030 Hb_002435_010 Hb_002435_010 Hb_000668_190--Hb_002435_010 Hb_064971_010 Hb_064971_010 Hb_002486_090--Hb_064971_010 Hb_002613_030 Hb_002613_030 Hb_002486_090--Hb_002613_030 Hb_002486_090--Hb_000668_190 Hb_002486_090--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_002486_090--Hb_006142_020 Hb_003018_210 Hb_003018_210 Hb_005141_020--Hb_003018_210 Hb_000035_190 Hb_000035_190 Hb_005141_020--Hb_000035_190 Hb_002837_120 Hb_002837_120 Hb_005141_020--Hb_002837_120 Hb_034498_010 Hb_034498_010 Hb_005141_020--Hb_034498_010 Hb_004174_030 Hb_004174_030 Hb_005141_020--Hb_004174_030 Hb_000347_310 Hb_000347_310 Hb_005141_020--Hb_000347_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141921 1.56882 20.337 4.82095 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.620042 0

CAGE analysis