Hb_000397_170

Information

Type -
Description -
Location Contig397: 320771-322000
Sequence    

Annotation

kegg
ID rcu:RCOM_0510210
description hypothetical protein
nr
ID XP_002532508.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0510210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39616: 320608-322282 , PASA_asmbl_39617: 321470-321627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003226_060 0.0231964845 - - Pectinesterase-2 precursor, putative [Ricinus communis]
3 Hb_001754_100 0.083309112 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
4 Hb_005599_010 0.0970367461 - - Protein MLO, putative [Ricinus communis]
5 Hb_000574_180 0.0984786856 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_150745_010 0.1125965467 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
7 Hb_000256_170 0.1144498548 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
8 Hb_004154_010 0.1215385741 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
9 Hb_025163_020 0.128705214 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
10 Hb_000413_220 0.1293189002 - - PREDICTED: kinesin-1 [Jatropha curcas]
11 Hb_000261_340 0.1415614565 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
12 Hb_000483_050 0.1434143782 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
13 Hb_008215_020 0.1475328058 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_002540_100 0.1614159316 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_001005_170 0.1623660578 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_000656_120 0.164299018 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
17 Hb_000574_270 0.1654809477 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
18 Hb_007894_100 0.1688120354 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
19 Hb_000397_140 0.170088864 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
20 Hb_185830_090 0.1710045734 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000397_170 Hb_000397_170 Hb_003226_060 Hb_003226_060 Hb_000397_170--Hb_003226_060 Hb_001754_100 Hb_001754_100 Hb_000397_170--Hb_001754_100 Hb_005599_010 Hb_005599_010 Hb_000397_170--Hb_005599_010 Hb_000574_180 Hb_000574_180 Hb_000397_170--Hb_000574_180 Hb_150745_010 Hb_150745_010 Hb_000397_170--Hb_150745_010 Hb_000256_170 Hb_000256_170 Hb_000397_170--Hb_000256_170 Hb_003226_060--Hb_005599_010 Hb_003226_060--Hb_001754_100 Hb_004154_010 Hb_004154_010 Hb_003226_060--Hb_004154_010 Hb_003226_060--Hb_000574_180 Hb_003226_060--Hb_150745_010 Hb_001754_100--Hb_150745_010 Hb_001754_100--Hb_000574_180 Hb_000413_220 Hb_000413_220 Hb_001754_100--Hb_000413_220 Hb_001754_100--Hb_000256_170 Hb_005599_010--Hb_004154_010 Hb_002540_100 Hb_002540_100 Hb_005599_010--Hb_002540_100 Hb_014549_010 Hb_014549_010 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_000574_180--Hb_000413_220 Hb_000574_180--Hb_000256_170 Hb_000739_250 Hb_000739_250 Hb_000574_180--Hb_000739_250 Hb_000668_190 Hb_000668_190 Hb_000574_180--Hb_000668_190 Hb_150745_010--Hb_000413_220 Hb_150745_010--Hb_000574_180 Hb_000483_050 Hb_000483_050 Hb_150745_010--Hb_000483_050 Hb_000574_270 Hb_000574_270 Hb_150745_010--Hb_000574_270 Hb_000256_170--Hb_000413_220 Hb_000256_170--Hb_000739_250 Hb_000331_020 Hb_000331_020 Hb_000256_170--Hb_000331_020 Hb_000256_170--Hb_000668_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.620257 3.48299 1.51525 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.459862 0

CAGE analysis