Hb_002540_100

Information

Type -
Description -
Location Contig2540: 120739-124842
Sequence    

Annotation

kegg
ID rcu:RCOM_0246300
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012073038.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID A0A067KQU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06817 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26560: 121101-121216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_100 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
2 Hb_000371_030 0.09112003 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
3 Hb_000856_230 0.1038581747 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
4 Hb_004316_020 0.1133773663 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
5 Hb_003847_090 0.1164720499 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
6 Hb_005599_010 0.1171192508 - - Protein MLO, putative [Ricinus communis]
7 Hb_006873_010 0.1251167248 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_019429_020 0.1256561011 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_006197_010 0.1279092218 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_001117_020 0.1286942333 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
11 Hb_164337_010 0.1313143692 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
12 Hb_015037_010 0.1317433499 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
13 Hb_004788_030 0.1317561031 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_008821_030 0.1321578192 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
15 Hb_004586_050 0.1332803482 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
16 Hb_002200_020 0.1343795595 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
17 Hb_004314_020 0.1361302876 - - Auxin-responsive GH3 family protein [Theobroma cacao]
18 Hb_006083_010 0.1382745635 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
19 Hb_003207_210 0.1401115567 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
20 Hb_001410_040 0.1403431757 - - Protein ABIL2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002540_100 Hb_002540_100 Hb_000371_030 Hb_000371_030 Hb_002540_100--Hb_000371_030 Hb_000856_230 Hb_000856_230 Hb_002540_100--Hb_000856_230 Hb_004316_020 Hb_004316_020 Hb_002540_100--Hb_004316_020 Hb_003847_090 Hb_003847_090 Hb_002540_100--Hb_003847_090 Hb_005599_010 Hb_005599_010 Hb_002540_100--Hb_005599_010 Hb_006873_010 Hb_006873_010 Hb_002540_100--Hb_006873_010 Hb_008821_030 Hb_008821_030 Hb_000371_030--Hb_008821_030 Hb_001117_020 Hb_001117_020 Hb_000371_030--Hb_001117_020 Hb_004788_030 Hb_004788_030 Hb_000371_030--Hb_004788_030 Hb_019429_020 Hb_019429_020 Hb_000371_030--Hb_019429_020 Hb_000371_030--Hb_003847_090 Hb_009421_090 Hb_009421_090 Hb_000856_230--Hb_009421_090 Hb_014700_020 Hb_014700_020 Hb_000856_230--Hb_014700_020 Hb_000200_270 Hb_000200_270 Hb_000856_230--Hb_000200_270 Hb_000856_230--Hb_004316_020 Hb_000856_230--Hb_000371_030 Hb_004316_020--Hb_006873_010 Hb_000392_170 Hb_000392_170 Hb_004316_020--Hb_000392_170 Hb_003502_040 Hb_003502_040 Hb_004316_020--Hb_003502_040 Hb_003248_030 Hb_003248_030 Hb_004316_020--Hb_003248_030 Hb_003207_210 Hb_003207_210 Hb_004316_020--Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_004316_020--Hb_164337_010 Hb_006083_010 Hb_006083_010 Hb_003847_090--Hb_006083_010 Hb_000277_030 Hb_000277_030 Hb_003847_090--Hb_000277_030 Hb_003847_090--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_003847_090--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_003847_090--Hb_009385_010 Hb_001002_020 Hb_001002_020 Hb_003847_090--Hb_001002_020 Hb_004154_010 Hb_004154_010 Hb_005599_010--Hb_004154_010 Hb_003226_060 Hb_003226_060 Hb_005599_010--Hb_003226_060 Hb_000397_170 Hb_000397_170 Hb_005599_010--Hb_000397_170 Hb_014549_010 Hb_014549_010 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_004314_020 Hb_004314_020 Hb_006873_010--Hb_004314_020 Hb_011028_040 Hb_011028_040 Hb_006873_010--Hb_011028_040 Hb_018563_010 Hb_018563_010 Hb_006873_010--Hb_018563_010 Hb_186995_010 Hb_186995_010 Hb_006873_010--Hb_186995_010 Hb_009252_090 Hb_009252_090 Hb_006873_010--Hb_009252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.22033 3.8134 1.99465 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.138628 0.0861719

CAGE analysis