Hb_003502_040

Information

Type -
Description -
Location Contig3502: 47480-51412
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40030g
description hypothetical protein
nr
ID XP_012075817.1
description PREDICTED: pathogen-related protein-like [Jatropha curcas]
swissprot
ID P16273
description Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2
trembl
ID A0A067KSJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10569 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36474: 47455-51348
cDNA
(Sanger)
(ID:Location)		 019_B23.ab1: 47858-51340 , 034_C11.ab1: 47840-51299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003502_040 0.0 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
2 Hb_003248_030 0.0438311529 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
3 Hb_018563_010 0.0842620315 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
4 Hb_029262_010 0.0940722335 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
5 Hb_004316_020 0.0962512763 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
6 Hb_000438_200 0.1153731036 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
7 Hb_005694_170 0.1167527858 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
8 Hb_006873_010 0.1269142843 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000809_130 0.1269578708 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
10 Hb_164337_010 0.1269791785 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
11 Hb_003376_110 0.1283892804 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003207_210 0.1313377855 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
13 Hb_000160_190 0.1321937645 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
14 Hb_000392_170 0.1323441418 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
15 Hb_000049_030 0.1375532008 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001715_060 0.139438356 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
17 Hb_167206_010 0.1404956837 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
18 Hb_000103_370 0.1416527633 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
19 Hb_007846_030 0.1425190351 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
20 Hb_004223_080 0.1433515408 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003502_040 Hb_003502_040 Hb_003248_030 Hb_003248_030 Hb_003502_040--Hb_003248_030 Hb_018563_010 Hb_018563_010 Hb_003502_040--Hb_018563_010 Hb_029262_010 Hb_029262_010 Hb_003502_040--Hb_029262_010 Hb_004316_020 Hb_004316_020 Hb_003502_040--Hb_004316_020 Hb_000438_200 Hb_000438_200 Hb_003502_040--Hb_000438_200 Hb_005694_170 Hb_005694_170 Hb_003502_040--Hb_005694_170 Hb_003248_030--Hb_004316_020 Hb_003248_030--Hb_018563_010 Hb_003248_030--Hb_029262_010 Hb_003248_030--Hb_005694_170 Hb_000809_130 Hb_000809_130 Hb_003248_030--Hb_000809_130 Hb_004553_040 Hb_004553_040 Hb_018563_010--Hb_004553_040 Hb_167206_010 Hb_167206_010 Hb_018563_010--Hb_167206_010 Hb_018563_010--Hb_000438_200 Hb_000319_010 Hb_000319_010 Hb_018563_010--Hb_000319_010 Hb_004308_030 Hb_004308_030 Hb_029262_010--Hb_004308_030 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_004202_030 Hb_004202_030 Hb_029262_010--Hb_004202_030 Hb_006501_080 Hb_006501_080 Hb_029262_010--Hb_006501_080 Hb_000049_030 Hb_000049_030 Hb_029262_010--Hb_000049_030 Hb_006873_010 Hb_006873_010 Hb_004316_020--Hb_006873_010 Hb_000392_170 Hb_000392_170 Hb_004316_020--Hb_000392_170 Hb_003207_210 Hb_003207_210 Hb_004316_020--Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_004316_020--Hb_164337_010 Hb_115962_010 Hb_115962_010 Hb_000438_200--Hb_115962_010 Hb_000438_200--Hb_000049_030 Hb_012496_020 Hb_012496_020 Hb_000438_200--Hb_012496_020 Hb_000438_200--Hb_167206_010 Hb_001025_140 Hb_001025_140 Hb_000438_200--Hb_001025_140 Hb_003376_110 Hb_003376_110 Hb_005694_170--Hb_003376_110 Hb_005694_170--Hb_164337_010 Hb_007846_030 Hb_007846_030 Hb_005694_170--Hb_007846_030 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167241 38.5882 128.984 86.5866 0 0.0320244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15269 0 0 0.336502 25.6746

CAGE analysis