Hb_167206_010

Information

Type -
Description -
Location Contig167206: 157-882
Sequence    

Annotation

kegg
ID rcu:RCOM_1371710
description serine-threonine protein kinase, plant-type, putative (EC:3.1.3.16)
nr
ID KDP46608.1
description hypothetical protein JCGZ_04542 [Jatropha curcas]
swissprot
ID O80809
description Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1
trembl
ID A0A067LGY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04542 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167206_010 0.0 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
2 Hb_004553_040 0.0520128083 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_186995_010 0.0637378836 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
4 Hb_001277_370 0.0790002686 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
5 Hb_018563_010 0.0813757314 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
6 Hb_012496_020 0.0859030941 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_000319_010 0.0894087015 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
8 Hb_000438_200 0.0973523325 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
9 Hb_001221_070 0.1005760036 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
10 Hb_007632_230 0.1058079283 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
11 Hb_002301_340 0.1253006439 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
12 Hb_115962_010 0.1323283743 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_006873_010 0.133316847 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_004040_010 0.1337917382 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_189208_060 0.1342939018 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
16 Hb_007357_010 0.1358209168 - - cytochrome P450, putative [Ricinus communis]
17 Hb_070613_010 0.1379957626 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_011794_050 0.1388100207 - - transcription factor, putative [Ricinus communis]
19 Hb_054926_010 0.1396085602 - - glutamate receptor 2 plant, putative [Ricinus communis]
20 Hb_026016_010 0.1400112326 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_167206_010 Hb_167206_010 Hb_004553_040 Hb_004553_040 Hb_167206_010--Hb_004553_040 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_001277_370 Hb_001277_370 Hb_167206_010--Hb_001277_370 Hb_018563_010 Hb_018563_010 Hb_167206_010--Hb_018563_010 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_000319_010 Hb_000319_010 Hb_167206_010--Hb_000319_010 Hb_004553_040--Hb_001277_370 Hb_001221_070 Hb_001221_070 Hb_004553_040--Hb_001221_070 Hb_007632_230 Hb_007632_230 Hb_004553_040--Hb_007632_230 Hb_004553_040--Hb_000319_010 Hb_004553_040--Hb_018563_010 Hb_186995_010--Hb_012496_020 Hb_186995_010--Hb_001277_370 Hb_186995_010--Hb_004553_040 Hb_186995_010--Hb_000319_010 Hb_006873_010 Hb_006873_010 Hb_186995_010--Hb_006873_010 Hb_001277_370--Hb_001221_070 Hb_001277_370--Hb_007632_230 Hb_007357_010 Hb_007357_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_003502_040 Hb_003502_040 Hb_018563_010--Hb_003502_040 Hb_000438_200 Hb_000438_200 Hb_018563_010--Hb_000438_200 Hb_018563_010--Hb_000319_010 Hb_003248_030 Hb_003248_030 Hb_018563_010--Hb_003248_030 Hb_012496_020--Hb_000438_200 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_115962_010 Hb_115962_010 Hb_012496_020--Hb_115962_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_000319_010--Hb_007632_230 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.269699 0.416801 0.252439 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.12014

CAGE analysis