Hb_115962_010

Information

Type -
Description -
Location Contig115962: 1-905
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_002529765.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID B9SUU6
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_0574930 PE=3 SV=1
Gene Ontology
ID GO:0016301
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115962_010 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_000438_200 0.0610293863 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
3 Hb_000049_030 0.0865478275 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000035_140 0.0947075849 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
5 Hb_012496_020 0.1062100409 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_009421_090 0.1100327805 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
7 Hb_001025_140 0.1122158985 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
8 Hb_059318_010 0.1187748427 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_018563_010 0.1205824243 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_001913_070 0.1209345122 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
11 Hb_014700_020 0.1286888792 - - tryptophan synthase beta chain, putative [Ricinus communis]
12 Hb_000429_240 0.128748 - - PREDICTED: uncharacterized protein LOC105645185 isoform X1 [Jatropha curcas]
13 Hb_000059_030 0.1293365259 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
14 Hb_167206_010 0.1323283743 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
15 Hb_059429_010 0.1335762946 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
16 Hb_001926_020 0.1370680787 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
17 Hb_000140_250 0.1399870246 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
18 Hb_189208_060 0.14216472 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
19 Hb_001983_040 0.1422992195 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
20 Hb_000392_170 0.1439134574 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_115962_010 Hb_115962_010 Hb_000438_200 Hb_000438_200 Hb_115962_010--Hb_000438_200 Hb_000049_030 Hb_000049_030 Hb_115962_010--Hb_000049_030 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_012496_020 Hb_012496_020 Hb_115962_010--Hb_012496_020 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_001025_140 Hb_001025_140 Hb_115962_010--Hb_001025_140 Hb_018563_010 Hb_018563_010 Hb_000438_200--Hb_018563_010 Hb_000438_200--Hb_000049_030 Hb_000438_200--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_000438_200--Hb_167206_010 Hb_000438_200--Hb_001025_140 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010 Hb_001660_080 Hb_001660_080 Hb_000035_140--Hb_001660_080 Hb_189208_060 Hb_189208_060 Hb_000035_140--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000035_140--Hb_001160_050 Hb_004551_010 Hb_004551_010 Hb_000035_140--Hb_004551_010 Hb_000035_140--Hb_012496_020 Hb_186995_010 Hb_186995_010 Hb_012496_020--Hb_186995_010 Hb_012496_020--Hb_167206_010 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_014700_020 Hb_014700_020 Hb_009421_090--Hb_014700_020 Hb_000856_230 Hb_000856_230 Hb_009421_090--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_009421_090--Hb_000200_270 Hb_003767_030 Hb_003767_030 Hb_009421_090--Hb_003767_030 Hb_003207_210 Hb_003207_210 Hb_009421_090--Hb_003207_210 Hb_004223_080 Hb_004223_080 Hb_001025_140--Hb_004223_080 Hb_000059_030 Hb_000059_030 Hb_001025_140--Hb_000059_030 Hb_001638_120 Hb_001638_120 Hb_001025_140--Hb_001638_120 Hb_001025_140--Hb_000049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.82243 5.05577 1.54526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0245697 0.961123

CAGE analysis