Hb_001983_040

Information

Type -
Description -
Location Contig1983: 19772-22627
Sequence    

Annotation

kegg
ID egr:104417333
description uncharacterized LOC104417333
nr
ID XP_012084657.1
description PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LLK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19910: 19667-22745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001983_040 0.0 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
2 Hb_010422_020 0.0462496545 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
3 Hb_059429_010 0.0465311102 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
4 Hb_001913_070 0.0827304364 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_000049_030 0.0903582051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000809_220 0.0908965918 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
7 Hb_000051_150 0.0959454215 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
8 Hb_104014_010 0.1028718258 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
9 Hb_004308_030 0.1032420192 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_006501_080 0.1082161707 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
11 Hb_006620_030 0.1091388182 - - nitrate reductase, putative [Ricinus communis]
12 Hb_032731_010 0.114044893 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
13 Hb_007007_100 0.1197525249 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
14 Hb_029262_010 0.1234367549 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
15 Hb_001680_020 0.1261730151 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
16 Hb_002121_030 0.1263625164 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
17 Hb_002499_050 0.1298693394 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001369_590 0.1306437149 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
19 Hb_005365_040 0.1328525061 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
20 Hb_000152_650 0.1346938939 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001983_040 Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_001983_040--Hb_010422_020 Hb_059429_010 Hb_059429_010 Hb_001983_040--Hb_059429_010 Hb_001913_070 Hb_001913_070 Hb_001983_040--Hb_001913_070 Hb_000049_030 Hb_000049_030 Hb_001983_040--Hb_000049_030 Hb_000809_220 Hb_000809_220 Hb_001983_040--Hb_000809_220 Hb_000051_150 Hb_000051_150 Hb_001983_040--Hb_000051_150 Hb_010422_020--Hb_059429_010 Hb_010422_020--Hb_001913_070 Hb_010422_020--Hb_000051_150 Hb_104014_010 Hb_104014_010 Hb_010422_020--Hb_104014_010 Hb_010422_020--Hb_000809_220 Hb_059429_010--Hb_000049_030 Hb_032731_010 Hb_032731_010 Hb_059429_010--Hb_032731_010 Hb_059429_010--Hb_001913_070 Hb_007007_100 Hb_007007_100 Hb_059429_010--Hb_007007_100 Hb_001913_070--Hb_104014_010 Hb_149985_030 Hb_149985_030 Hb_001913_070--Hb_149985_030 Hb_001913_070--Hb_000809_220 Hb_000349_170 Hb_000349_170 Hb_001913_070--Hb_000349_170 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_115962_010 Hb_115962_010 Hb_000049_030--Hb_115962_010 Hb_000438_200 Hb_000438_200 Hb_000049_030--Hb_000438_200 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010 Hb_002121_030 Hb_002121_030 Hb_000809_220--Hb_002121_030 Hb_000809_220--Hb_000051_150 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030 Hb_000051_150--Hb_002121_030 Hb_005365_040 Hb_005365_040 Hb_000051_150--Hb_005365_040 Hb_000051_150--Hb_104014_010 Hb_001369_590 Hb_001369_590 Hb_000051_150--Hb_001369_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00960724 5.46174 32.687 8.50167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.59157

CAGE analysis