Hb_004308_030

Information

Type -
Description -
Location Contig4308: 19287-36823
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14920g
description POPTRDRAFT_1095884; hypothetical protein
nr
ID XP_012080760.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KEU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15189 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42202: 33192-33709 , PASA_asmbl_42205: 35574-35730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004308_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_006501_080 0.0624810524 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
3 Hb_029262_010 0.0769679889 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
4 Hb_006620_030 0.078386858 - - nitrate reductase, putative [Ricinus communis]
5 Hb_000809_220 0.0890701736 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
6 Hb_049846_010 0.0961699966 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
7 Hb_004202_030 0.1017851088 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
8 Hb_001983_040 0.1032420192 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
9 Hb_000160_190 0.1046244345 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
10 Hb_003207_120 0.1091025537 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
11 Hb_000049_030 0.1096403495 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001913_070 0.1106362754 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
13 Hb_000349_250 0.1119135694 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
14 Hb_001680_020 0.1119793795 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
15 Hb_001519_090 0.1133565888 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_000139_040 0.1138182117 - - spermine synthase, putative [Ricinus communis]
17 Hb_129956_010 0.117101228 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
18 Hb_010422_020 0.1206241727 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
19 Hb_019973_010 0.1214897871 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
20 Hb_059429_010 0.1222743626 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004308_030 Hb_004308_030 Hb_006501_080 Hb_006501_080 Hb_004308_030--Hb_006501_080 Hb_029262_010 Hb_029262_010 Hb_004308_030--Hb_029262_010 Hb_006620_030 Hb_006620_030 Hb_004308_030--Hb_006620_030 Hb_000809_220 Hb_000809_220 Hb_004308_030--Hb_000809_220 Hb_049846_010 Hb_049846_010 Hb_004308_030--Hb_049846_010 Hb_004202_030 Hb_004202_030 Hb_004308_030--Hb_004202_030 Hb_006501_080--Hb_006620_030 Hb_001680_020 Hb_001680_020 Hb_006501_080--Hb_001680_020 Hb_006501_080--Hb_004202_030 Hb_006501_080--Hb_029262_010 Hb_003207_120 Hb_003207_120 Hb_006501_080--Hb_003207_120 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_029262_010--Hb_004202_030 Hb_003502_040 Hb_003502_040 Hb_029262_010--Hb_003502_040 Hb_000049_030 Hb_000049_030 Hb_029262_010--Hb_000049_030 Hb_105148_020 Hb_105148_020 Hb_006620_030--Hb_105148_020 Hb_001369_590 Hb_001369_590 Hb_006620_030--Hb_001369_590 Hb_002499_050 Hb_002499_050 Hb_006620_030--Hb_002499_050 Hb_129956_010 Hb_129956_010 Hb_006620_030--Hb_129956_010 Hb_002121_030 Hb_002121_030 Hb_000809_220--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_000809_220--Hb_000051_150 Hb_001913_070 Hb_001913_070 Hb_000809_220--Hb_001913_070 Hb_001983_040 Hb_001983_040 Hb_000809_220--Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_000809_220--Hb_010422_020 Hb_049846_010--Hb_000160_190 Hb_000139_040 Hb_000139_040 Hb_049846_010--Hb_000139_040 Hb_049846_010--Hb_129956_010 Hb_001958_040 Hb_001958_040 Hb_049846_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_049846_010--Hb_004007_050 Hb_023640_020 Hb_023640_020 Hb_049846_010--Hb_023640_020 Hb_004202_030--Hb_003207_120 Hb_000086_470 Hb_000086_470 Hb_004202_030--Hb_000086_470 Hb_019973_010 Hb_019973_010 Hb_004202_030--Hb_019973_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.540962 4.50075 1.73409 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0134667 0 0 0.0440083 1.16401

CAGE analysis