Hb_000139_040

Information

Type -
Description -
Location Contig139: 80768-84786
Sequence    

Annotation

kegg
ID rcu:RCOM_0677780
description spermine synthase, putative (EC:2.5.1.16)
nr
ID XP_002516774.1
description spermine synthase, putative [Ricinus communis]
swissprot
ID Q9S7X6
description Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1
trembl
ID B9RSQ5
description Spermine synthase, putative OS=Ricinus communis GN=RCOM_0677780 PE=3 SV=1
Gene Ontology
ID GO:0003824
description thermospermine synthase acaulis5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10613: 80654-84783 , PASA_asmbl_10614: 81559-84783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_040 0.0 - - spermine synthase, putative [Ricinus communis]
2 Hb_049846_010 0.0741657052 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
3 Hb_001258_130 0.0761241704 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_129956_010 0.0823257815 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
5 Hb_023640_020 0.0845483507 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000031_240 0.0859297664 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_005357_140 0.0884416773 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
8 Hb_004007_050 0.0889309557 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
9 Hb_001519_090 0.0904891505 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_004453_160 0.0926776 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001958_040 0.0935451099 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
12 Hb_000397_060 0.0947106269 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
13 Hb_105148_020 0.0973976636 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
14 Hb_000160_190 0.0995369279 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
15 Hb_019973_010 0.1040855786 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
16 Hb_005977_080 0.1048336949 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
17 Hb_006620_030 0.1058563572 - - nitrate reductase, putative [Ricinus communis]
18 Hb_004137_110 0.1063545172 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
19 Hb_016297_010 0.1079034677 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
20 Hb_000331_170 0.1088166231 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_040 Hb_000139_040 Hb_049846_010 Hb_049846_010 Hb_000139_040--Hb_049846_010 Hb_001258_130 Hb_001258_130 Hb_000139_040--Hb_001258_130 Hb_129956_010 Hb_129956_010 Hb_000139_040--Hb_129956_010 Hb_023640_020 Hb_023640_020 Hb_000139_040--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_000139_040--Hb_000031_240 Hb_005357_140 Hb_005357_140 Hb_000139_040--Hb_005357_140 Hb_000160_190 Hb_000160_190 Hb_049846_010--Hb_000160_190 Hb_049846_010--Hb_129956_010 Hb_001958_040 Hb_001958_040 Hb_049846_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_049846_010--Hb_004007_050 Hb_049846_010--Hb_023640_020 Hb_001511_210 Hb_001511_210 Hb_001258_130--Hb_001511_210 Hb_016297_010 Hb_016297_010 Hb_001258_130--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_001258_130--Hb_105148_020 Hb_002066_100 Hb_002066_100 Hb_001258_130--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_001258_130--Hb_000722_030 Hb_023827_030 Hb_023827_030 Hb_129956_010--Hb_023827_030 Hb_129956_010--Hb_105148_020 Hb_006620_030 Hb_006620_030 Hb_129956_010--Hb_006620_030 Hb_000312_100 Hb_000312_100 Hb_129956_010--Hb_000312_100 Hb_023640_020--Hb_000160_190 Hb_004128_150 Hb_004128_150 Hb_023640_020--Hb_004128_150 Hb_023640_020--Hb_004007_050 Hb_004137_110 Hb_004137_110 Hb_023640_020--Hb_004137_110 Hb_005977_080 Hb_005977_080 Hb_023640_020--Hb_005977_080 Hb_000331_170 Hb_000331_170 Hb_000031_240--Hb_000331_170 Hb_000031_240--Hb_004007_050 Hb_000031_240--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_000031_240--Hb_004453_160 Hb_011310_170 Hb_011310_170 Hb_000031_240--Hb_011310_170 Hb_000031_240--Hb_005977_080 Hb_000397_060 Hb_000397_060 Hb_005357_140--Hb_000397_060 Hb_001301_310 Hb_001301_310 Hb_005357_140--Hb_001301_310 Hb_005357_140--Hb_049846_010 Hb_005357_140--Hb_001958_040 Hb_000283_090 Hb_000283_090 Hb_005357_140--Hb_000283_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27172 1.54118 25.6639 12.9532 0.0364134 0.0170901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0700917 8.42357

CAGE analysis