Hb_001511_210

Information

Type -
Description -
Location Contig1511: 249346-265601
Sequence    

Annotation

kegg
ID rcu:RCOM_0838210
description hypothetical protein
nr
ID XP_012087171.1
description PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
swissprot
ID Q9SEZ9
description Protein trichome birefringence-like 30 OS=Arabidopsis thaliana GN=TBL30 PE=2 SV=1
trembl
ID B9SQN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0838210 PE=4 SV=1
Gene Ontology
ID GO:0050826
description protein eskimo 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12776: 250117-250404 , PASA_asmbl_12777: 257592-259995 , PASA_asmbl_12778: 257592-259995 , PASA_asmbl_12779: 261725-262335 , PASA_asmbl_12780: 262463-262891 , PASA_asmbl_12781: 262991-263325 , PASA_asmbl_12782: 265101-265698 , PASA_asmbl_12783: 266304-267083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_210 0.0 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
2 Hb_001258_130 0.0698558935 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
3 Hb_002301_120 0.080626815 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
4 Hb_002066_100 0.0837973366 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
5 Hb_016297_010 0.0844038369 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
6 Hb_000722_030 0.0852112167 - - putative plant disease resistance family protein [Populus trichocarpa]
7 Hb_002374_470 0.088617691 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
8 Hb_002518_040 0.0895513088 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_001053_170 0.0960418852 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
10 Hb_011671_050 0.096561417 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
11 Hb_001439_050 0.1009712271 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
12 Hb_001140_190 0.1033999656 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
13 Hb_005276_140 0.1096515039 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023582_010 0.1108055178 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002045_160 0.1111657869 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
16 Hb_027684_010 0.1113338426 - - hypothetical protein RCOM_0504250 [Ricinus communis]
17 Hb_000331_170 0.1121178603 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
18 Hb_105148_020 0.1123816869 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
19 Hb_000031_240 0.1126544914 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_019053_040 0.1131816997 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_001511_210 Hb_001511_210 Hb_001258_130 Hb_001258_130 Hb_001511_210--Hb_001258_130 Hb_002301_120 Hb_002301_120 Hb_001511_210--Hb_002301_120 Hb_002066_100 Hb_002066_100 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_000722_030 Hb_000722_030 Hb_001511_210--Hb_000722_030 Hb_002374_470 Hb_002374_470 Hb_001511_210--Hb_002374_470 Hb_001258_130--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_001258_130--Hb_105148_020 Hb_000139_040 Hb_000139_040 Hb_001258_130--Hb_000139_040 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_002301_120--Hb_001258_130 Hb_003894_170 Hb_003894_170 Hb_002301_120--Hb_003894_170 Hb_001439_050 Hb_001439_050 Hb_002301_120--Hb_001439_050 Hb_001053_170 Hb_001053_170 Hb_002301_120--Hb_001053_170 Hb_000073_040 Hb_000073_040 Hb_002301_120--Hb_000073_040 Hb_002066_100--Hb_000722_030 Hb_019053_040 Hb_019053_040 Hb_002066_100--Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_002066_100--Hb_023582_010 Hb_027684_010 Hb_027684_010 Hb_002066_100--Hb_027684_010 Hb_023827_030 Hb_023827_030 Hb_016297_010--Hb_023827_030 Hb_016297_010--Hb_023582_010 Hb_016297_010--Hb_000722_030 Hb_016297_010--Hb_019053_040 Hb_016297_010--Hb_105148_020 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_000722_030--Hb_023582_010 Hb_000722_030--Hb_019053_040 Hb_000722_030--Hb_027684_010 Hb_011671_050 Hb_011671_050 Hb_002374_470--Hb_011671_050 Hb_002374_470--Hb_027684_010 Hb_019613_030 Hb_019613_030 Hb_002374_470--Hb_019613_030 Hb_002374_470--Hb_002066_100 Hb_002374_470--Hb_002518_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0252921 0.523279 19.95 9.70683 0.0412544 0.123583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.036515 0.0478926 0.0918479 0.77433 8.09496

CAGE analysis