Hb_002374_470

Information

Type -
Description -
Location Contig2374: 397666-401682
Sequence    

Annotation

kegg
ID rcu:RCOM_1030810
description DNA double-strand break repair rad50 ATPase, putative
nr
ID XP_012078245.1
description PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
swissprot
ID Q8LLE5
description Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1
trembl
ID A0A067KCT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12095 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24912: 397642-398953 , PASA_asmbl_24913: 399002-399187 , PASA_asmbl_24914: 399207-399602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_470 0.0 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
2 Hb_001511_210 0.088617691 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
3 Hb_011671_050 0.1042615216 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
4 Hb_027684_010 0.107605875 - - hypothetical protein RCOM_0504250 [Ricinus communis]
5 Hb_019613_030 0.1133143689 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
6 Hb_002066_100 0.1155236311 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
7 Hb_002518_040 0.1165812699 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
8 Hb_001053_170 0.1173727734 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
9 Hb_002301_120 0.11867861 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
10 Hb_001439_050 0.1190554761 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
11 Hb_000722_030 0.1191281389 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_001269_060 0.1223776793 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
13 Hb_000283_030 0.1253606102 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
14 Hb_001140_190 0.1275213162 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
15 Hb_004115_010 0.1276943305 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
16 Hb_004218_140 0.1282724178 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
17 Hb_003101_020 0.1286204295 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
18 Hb_001079_060 0.1304797406 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
19 Hb_004122_010 0.1306848845 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
20 Hb_000017_200 0.1309657065 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_470 Hb_002374_470 Hb_001511_210 Hb_001511_210 Hb_002374_470--Hb_001511_210 Hb_011671_050 Hb_011671_050 Hb_002374_470--Hb_011671_050 Hb_027684_010 Hb_027684_010 Hb_002374_470--Hb_027684_010 Hb_019613_030 Hb_019613_030 Hb_002374_470--Hb_019613_030 Hb_002066_100 Hb_002066_100 Hb_002374_470--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_002374_470--Hb_002518_040 Hb_001258_130 Hb_001258_130 Hb_001511_210--Hb_001258_130 Hb_002301_120 Hb_002301_120 Hb_001511_210--Hb_002301_120 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_000722_030 Hb_000722_030 Hb_001511_210--Hb_000722_030 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_011671_050--Hb_002518_040 Hb_001439_050 Hb_001439_050 Hb_011671_050--Hb_001439_050 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160 Hb_027684_010--Hb_000722_030 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_027684_010--Hb_002066_100 Hb_027684_010--Hb_002518_040 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160 Hb_000032_610 Hb_000032_610 Hb_019613_030--Hb_000032_610 Hb_000392_260 Hb_000392_260 Hb_019613_030--Hb_000392_260 Hb_003702_060 Hb_003702_060 Hb_019613_030--Hb_003702_060 Hb_000711_030 Hb_000711_030 Hb_019613_030--Hb_000711_030 Hb_029920_010 Hb_029920_010 Hb_019613_030--Hb_029920_010 Hb_002066_100--Hb_000722_030 Hb_019053_040 Hb_019053_040 Hb_002066_100--Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_002066_100--Hb_023582_010 Hb_002066_100--Hb_001258_130 Hb_002518_040--Hb_000722_030 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_002518_040--Hb_001439_050 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167022 0.578406 18.1894 9.25213 0.222037 0.369777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108798 0.057074 0.135937 1.64345 8.57849

CAGE analysis