Hb_000392_260

Information

Type -
Description -
Location Contig392: 224498-229362
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07120g
description POPTRDRAFT_661879; hypothetical protein
nr
ID XP_012080242.1
description PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
swissprot
ID Q9FJJ5
description Microtubule-associated protein RP/EB family member 1B OS=Arabidopsis thaliana GN=EB1B PE=1 SV=1
trembl
ID A0A067KHF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11610 PE=4 SV=1
Gene Ontology
ID GO:0008017
description microtubule-associated protein rp eb family member 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39263: 224702-229036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_260 0.0 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
2 Hb_001159_070 0.0725609087 - - DNA photolyase, putative [Ricinus communis]
3 Hb_000283_030 0.0937909614 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
4 Hb_000300_110 0.1026135844 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
5 Hb_000424_130 0.1028285922 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
6 Hb_005535_070 0.1042155964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000711_030 0.1063973506 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
8 Hb_007545_070 0.1075009473 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
9 Hb_000239_050 0.1080990069 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
10 Hb_000020_090 0.1092667554 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
11 Hb_103474_010 0.1120648461 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_029920_010 0.1139703445 - - pepsin A, putative [Ricinus communis]
13 Hb_000948_120 0.116107373 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
14 Hb_019613_030 0.1191004804 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
15 Hb_006816_250 0.1214545295 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
16 Hb_002391_030 0.1218485437 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
17 Hb_000302_360 0.1218972292 - - beta-carotene hydroxylase, putative [Ricinus communis]
18 Hb_127263_010 0.1226447679 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
19 Hb_000950_020 0.1232462367 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
20 Hb_132356_010 0.1241361304 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_260 Hb_000392_260 Hb_001159_070 Hb_001159_070 Hb_000392_260--Hb_001159_070 Hb_000283_030 Hb_000283_030 Hb_000392_260--Hb_000283_030 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000711_030 Hb_000711_030 Hb_000392_260--Hb_000711_030 Hb_001159_070--Hb_000711_030 Hb_004920_020 Hb_004920_020 Hb_001159_070--Hb_004920_020 Hb_000950_020 Hb_000950_020 Hb_001159_070--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_001159_070--Hb_005000_110 Hb_000948_120 Hb_000948_120 Hb_001159_070--Hb_000948_120 Hb_103474_010 Hb_103474_010 Hb_000283_030--Hb_103474_010 Hb_000976_400 Hb_000976_400 Hb_000283_030--Hb_000976_400 Hb_006816_250 Hb_006816_250 Hb_000283_030--Hb_006816_250 Hb_003416_020 Hb_003416_020 Hb_000283_030--Hb_003416_020 Hb_001517_070 Hb_001517_070 Hb_000283_030--Hb_001517_070 Hb_127263_010 Hb_127263_010 Hb_000300_110--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000300_110--Hb_000239_050 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_002835_310 Hb_002835_310 Hb_000424_130--Hb_002835_310 Hb_000424_130--Hb_007545_070 Hb_000424_130--Hb_000300_110 Hb_000424_130--Hb_029920_010 Hb_000424_130--Hb_127263_010 Hb_002391_030 Hb_002391_030 Hb_005535_070--Hb_002391_030 Hb_005535_070--Hb_002835_310 Hb_005535_070--Hb_007545_070 Hb_005535_070--Hb_000239_050 Hb_002822_010 Hb_002822_010 Hb_005535_070--Hb_002822_010 Hb_005535_070--Hb_000300_110 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_000711_030--Hb_000950_020 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592652 5.98242 71.1486 35.2615 0.0361088 0.114343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.772075 0.404957 1.90744 10.1553 63.2628

CAGE analysis