Hb_001517_070

Information

Type -
Description -
Location Contig1517: 82472-91071
Sequence    

Annotation

kegg
ID rcu:RCOM_0868250
description protein with unknown function (EC:2.3.1.97)
nr
ID XP_002519960.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q94F87
description DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3
trembl
ID B9S1U5
description Cytosine-specific methyltransferase OS=Ricinus communis GN=RCOM_0868250 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna (cytosine-5)-methyltransferase cmt2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12879: 88051-88231 , PASA_asmbl_12880: 82350-90150 , PASA_asmbl_12881: 82350-90150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_070 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000283_030 0.1105931059 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
3 Hb_103474_010 0.1211928836 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_004218_200 0.1213085709 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_004592_010 0.1213983496 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
6 Hb_003580_050 0.1232529242 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
7 Hb_004218_140 0.1254142978 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
8 Hb_001488_420 0.1267889357 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
9 Hb_000416_090 0.1269782209 - - Aquaporin NIP1.1, putative [Ricinus communis]
10 Hb_000008_150 0.1274826027 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_005144_060 0.1284321119 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
12 Hb_008304_010 0.1285091652 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
13 Hb_005730_110 0.129736391 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_002822_010 0.1298078824 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
15 Hb_001104_150 0.1300472208 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_019570_010 0.1307282461 - - lyase, putative [Ricinus communis]
17 Hb_002374_470 0.131940378 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
18 Hb_008705_030 0.1320540828 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
19 Hb_003666_070 0.1325753056 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
20 Hb_006816_250 0.1339282365 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]

Gene co-expression network

sample Hb_001517_070 Hb_001517_070 Hb_000283_030 Hb_000283_030 Hb_001517_070--Hb_000283_030 Hb_103474_010 Hb_103474_010 Hb_001517_070--Hb_103474_010 Hb_004218_200 Hb_004218_200 Hb_001517_070--Hb_004218_200 Hb_004592_010 Hb_004592_010 Hb_001517_070--Hb_004592_010 Hb_003580_050 Hb_003580_050 Hb_001517_070--Hb_003580_050 Hb_004218_140 Hb_004218_140 Hb_001517_070--Hb_004218_140 Hb_000283_030--Hb_103474_010 Hb_000392_260 Hb_000392_260 Hb_000283_030--Hb_000392_260 Hb_000976_400 Hb_000976_400 Hb_000283_030--Hb_000976_400 Hb_006816_250 Hb_006816_250 Hb_000283_030--Hb_006816_250 Hb_003416_020 Hb_003416_020 Hb_000283_030--Hb_003416_020 Hb_103474_010--Hb_000976_400 Hb_103474_010--Hb_000392_260 Hb_005725_240 Hb_005725_240 Hb_103474_010--Hb_005725_240 Hb_001148_110 Hb_001148_110 Hb_103474_010--Hb_001148_110 Hb_000320_310 Hb_000320_310 Hb_004218_200--Hb_000320_310 Hb_004218_200--Hb_003580_050 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110 Hb_019570_010 Hb_019570_010 Hb_004592_010--Hb_019570_010 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010 Hb_000732_220 Hb_000732_220 Hb_004592_010--Hb_000732_220 Hb_000359_180 Hb_000359_180 Hb_004592_010--Hb_000359_180 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004602_010 Hb_004602_010 Hb_004218_140--Hb_004602_010 Hb_001488_420 Hb_001488_420 Hb_004218_140--Hb_001488_420 Hb_121313_010 Hb_121313_010 Hb_004218_140--Hb_121313_010 Hb_005892_050 Hb_005892_050 Hb_004218_140--Hb_005892_050 Hb_004218_140--Hb_008304_010 Hb_000627_040 Hb_000627_040 Hb_004218_140--Hb_000627_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217595 0.434247 5.21507 3.49952 0.0894222 0.112461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0603281 0 0 1.24987 3.33048

CAGE analysis