Hb_001148_110

Information

Type -
Description -
Location Contig1148: 100639-106010
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04470: 100669-104171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_110 0.0 - - -
2 Hb_000722_030 0.0904496716 - - putative plant disease resistance family protein [Populus trichocarpa]
3 Hb_001638_200 0.0935218848 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
4 Hb_002835_310 0.0938737831 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000156_110 0.0941289796 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
6 Hb_001942_010 0.0955234584 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
7 Hb_002042_180 0.0972806367 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_000486_020 0.0974233454 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
9 Hb_004223_150 0.0989328763 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
10 Hb_021443_060 0.0991910263 - - PTH-1 family protein [Populus trichocarpa]
11 Hb_007545_070 0.1001443704 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
12 Hb_000976_400 0.1007191049 - - synaptotagmin, putative [Ricinus communis]
13 Hb_000020_090 0.101538778 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
14 Hb_027684_010 0.1021472563 - - hypothetical protein RCOM_0504250 [Ricinus communis]
15 Hb_002518_040 0.1034657408 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_001439_080 0.1045795494 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_005725_240 0.1052097668 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
18 Hb_004635_120 0.1057151356 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
19 Hb_001750_020 0.1072568192 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
20 Hb_084303_010 0.1076455905 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001148_110 Hb_001148_110 Hb_000722_030 Hb_000722_030 Hb_001148_110--Hb_000722_030 Hb_001638_200 Hb_001638_200 Hb_001148_110--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_001148_110--Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_001148_110--Hb_000156_110 Hb_001942_010 Hb_001942_010 Hb_001148_110--Hb_001942_010 Hb_002042_180 Hb_002042_180 Hb_001148_110--Hb_002042_180 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_023582_010 Hb_023582_010 Hb_000722_030--Hb_023582_010 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_027684_010 Hb_027684_010 Hb_000722_030--Hb_027684_010 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_000424_130 Hb_000424_130 Hb_002835_310--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002835_310--Hb_001516_010 Hb_007545_070 Hb_007545_070 Hb_002835_310--Hb_007545_070 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_000156_110--Hb_004635_120 Hb_000156_110--Hb_002609_120 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_000046_120 Hb_000046_120 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_002042_180--Hb_000722_030 Hb_002042_180--Hb_027684_010 Hb_002042_180--Hb_023582_010 Hb_004102_060 Hb_004102_060 Hb_002042_180--Hb_004102_060 Hb_002042_180--Hb_002518_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166497 7.22542 64.8469 40.4812 1.58872 0.160271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253053 0 0 3.63959 49.1145

CAGE analysis