Hb_002042_180

Information

Type -
Description -
Location Contig2042: 164206-166777
Sequence    

Annotation

kegg
ID pmum:103344671
description probable serine/threonine-protein kinase NAK
nr
ID XP_012089099.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067JI35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23375 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase cdl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20956: 164173-164288 , PASA_asmbl_20957: 164372-164862 , PASA_asmbl_20958: 165615-166211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_180 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_000722_030 0.0921872596 - - putative plant disease resistance family protein [Populus trichocarpa]
3 Hb_001148_110 0.0972806367 - - -
4 Hb_027684_010 0.0993013662 - - hypothetical protein RCOM_0504250 [Ricinus communis]
5 Hb_023582_010 0.1011670356 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004102_060 0.101315283 - - JHL25H03.11 [Jatropha curcas]
7 Hb_002518_040 0.1025264391 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
8 Hb_021443_060 0.1030996079 - - PTH-1 family protein [Populus trichocarpa]
9 Hb_174899_010 0.1069552749 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_003207_120 0.1088440397 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
11 Hb_002066_100 0.1123937138 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
12 Hb_000020_090 0.1130151377 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
13 Hb_006501_130 0.1137640057 - - conserved hypothetical protein [Ricinus communis]
14 Hb_016297_010 0.113883863 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
15 Hb_000156_110 0.1140789561 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
16 Hb_007545_070 0.1147804931 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
17 Hb_005535_070 0.1158051162 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019053_040 0.1164557408 - - cytochrome P450, putative [Ricinus communis]
19 Hb_011671_050 0.1171181603 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
20 Hb_001266_010 0.1180342679 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]

Gene co-expression network

sample Hb_002042_180 Hb_002042_180 Hb_000722_030 Hb_000722_030 Hb_002042_180--Hb_000722_030 Hb_001148_110 Hb_001148_110 Hb_002042_180--Hb_001148_110 Hb_027684_010 Hb_027684_010 Hb_002042_180--Hb_027684_010 Hb_023582_010 Hb_023582_010 Hb_002042_180--Hb_023582_010 Hb_004102_060 Hb_004102_060 Hb_002042_180--Hb_004102_060 Hb_002518_040 Hb_002518_040 Hb_002042_180--Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_000722_030--Hb_023582_010 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_000722_030--Hb_027684_010 Hb_001148_110--Hb_000722_030 Hb_001638_200 Hb_001638_200 Hb_001148_110--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_001148_110--Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_001148_110--Hb_000156_110 Hb_001942_010 Hb_001942_010 Hb_001148_110--Hb_001942_010 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_027684_010--Hb_002066_100 Hb_027684_010--Hb_002518_040 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160 Hb_023582_010--Hb_019053_040 Hb_000282_020 Hb_000282_020 Hb_023582_010--Hb_000282_020 Hb_023582_010--Hb_016297_010 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_105148_020 Hb_105148_020 Hb_023582_010--Hb_105148_020 Hb_000020_090 Hb_000020_090 Hb_004102_060--Hb_000020_090 Hb_004102_060--Hb_000358_160 Hb_000313_250 Hb_000313_250 Hb_004102_060--Hb_000313_250 Hb_005000_110 Hb_005000_110 Hb_004102_060--Hb_005000_110 Hb_004102_060--Hb_027684_010 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0940567 1.28805 0.652423 0.0145681 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331365 0 0 0.0624788 0.761825

CAGE analysis