Hb_000020_090

Information

Type -
Description -
Location Contig20: 147580-150515
Sequence    

Annotation

kegg
ID rcu:RCOM_0760990
description hypothetical protein
nr
ID KDP35646.1
description hypothetical protein JCGZ_09084 [Jatropha curcas]
swissprot
ID O80934
description Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=2 SV=2
trembl
ID A0A067KHD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09084 PE=4 SV=1
Gene Ontology
ID GO:0009570
description nad-dependent dehydrogenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20149: 147542-150335
cDNA
(Sanger)
(ID:Location)		 002_A12.ab1: 147886-150334 , 007_E16.ab1: 147867-150333 , 010_K24.ab1: 147888-150333 , 011_K11.ab1: 148147-150334 , 012_E18.ab1: 147877-150334 , 014_P12.ab1: 147862-150334 , 033_D15.ab1: 148057-150334 , 037_E16.ab1: 147882-150334 , 037_J21.ab1: 147865-150333 , 042_A06.ab1: 147740-149510 , 043_D07.ab1: 147898-150334 , 047_K20.ab1: 147867-150334 , 048_B19.ab1: 147865-150334 , 048_N17.ab1: 147880-150334 , 053_A22.ab1: 147698-149510 , 053_L02.ab1: 148076-150282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_090 0.0 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
2 Hb_002702_010 0.0846396864 - - carbohydrate binding protein, putative [Ricinus communis]
3 Hb_004102_060 0.0850046641 - - JHL25H03.11 [Jatropha curcas]
4 Hb_012395_090 0.0890033165 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
5 Hb_000156_110 0.0893115484 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
6 Hb_004635_120 0.0930019064 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
7 Hb_002818_150 0.0954531464 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
8 Hb_011472_030 0.0978693112 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
9 Hb_004223_150 0.0992688385 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
10 Hb_000424_130 0.0993551841 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
11 Hb_001148_110 0.101538778 - - -
12 Hb_011013_040 0.1024170212 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
13 Hb_001942_010 0.1029012216 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
14 Hb_029920_010 0.1038734332 - - pepsin A, putative [Ricinus communis]
15 Hb_005725_240 0.1042470764 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
16 Hb_000116_220 0.1046819697 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000046_120 0.1056073084 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
18 Hb_000976_400 0.1073948342 - - synaptotagmin, putative [Ricinus communis]
19 Hb_001750_020 0.1076537654 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
20 Hb_001266_010 0.1084502901 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]

Gene co-expression network

sample Hb_000020_090 Hb_000020_090 Hb_002702_010 Hb_002702_010 Hb_000020_090--Hb_002702_010 Hb_004102_060 Hb_004102_060 Hb_000020_090--Hb_004102_060 Hb_012395_090 Hb_012395_090 Hb_000020_090--Hb_012395_090 Hb_000156_110 Hb_000156_110 Hb_000020_090--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_000020_090--Hb_004635_120 Hb_002818_150 Hb_002818_150 Hb_000020_090--Hb_002818_150 Hb_002702_010--Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_002702_010--Hb_011013_040 Hb_004223_150 Hb_004223_150 Hb_002702_010--Hb_004223_150 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_001942_010 Hb_001942_010 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_002042_180 Hb_002042_180 Hb_004102_060--Hb_002042_180 Hb_000358_160 Hb_000358_160 Hb_004102_060--Hb_000358_160 Hb_000313_250 Hb_000313_250 Hb_004102_060--Hb_000313_250 Hb_005000_110 Hb_005000_110 Hb_004102_060--Hb_005000_110 Hb_027684_010 Hb_027684_010 Hb_004102_060--Hb_027684_010 Hb_012395_090--Hb_011013_040 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_012395_090--Hb_001942_010 Hb_012395_090--Hb_004223_150 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_000156_110--Hb_004635_120 Hb_002609_120 Hb_002609_120 Hb_000156_110--Hb_002609_120 Hb_001638_200 Hb_001638_200 Hb_000156_110--Hb_001638_200 Hb_032920_020 Hb_032920_020 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_004635_120--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_004635_120--Hb_012395_240 Hb_000538_090 Hb_000538_090 Hb_004635_120--Hb_000538_090 Hb_004635_120--Hb_000000_390 Hb_004635_120--Hb_032920_020 Hb_002818_150--Hb_000046_120 Hb_000002_500 Hb_000002_500 Hb_002818_150--Hb_000002_500 Hb_001210_060 Hb_001210_060 Hb_002818_150--Hb_001210_060 Hb_005725_240 Hb_005725_240 Hb_002818_150--Hb_005725_240 Hb_002818_150--Hb_001942_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82928 29.0964 300.193 188.641 0.818418 1.2305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41647 3.23666 2.16076 13.1062 269.551

CAGE analysis