Hb_000313_250

Information

Type -
Description -
Location Contig313: 353147-353947
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12650g
description POPTRDRAFT_720159; hypothetical protein
nr
ID XP_012075675.1
description PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
swissprot
ID Q9ZU38
description Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=1
trembl
ID A0A067KFG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09264 PE=3 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_250 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
2 Hb_000890_170 0.0747309918 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
3 Hb_110266_010 0.0778792913 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
4 Hb_092516_010 0.0789182096 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
5 Hb_002007_120 0.0833882689 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
6 Hb_021443_060 0.0836552346 - - PTH-1 family protein [Populus trichocarpa]
7 Hb_000005_060 0.087558064 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
8 Hb_000358_160 0.0888294899 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
9 Hb_000294_020 0.0915951965 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
10 Hb_007007_100 0.0920007483 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
11 Hb_000236_130 0.0942512334 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
12 Hb_005488_210 0.0947043821 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_000007_330 0.0957073723 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_000282_020 0.0966616935 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
15 Hb_003038_230 0.0981777547 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
16 Hb_179129_010 0.0990656598 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
17 Hb_000962_090 0.100515687 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
18 Hb_001266_010 0.1013052653 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
19 Hb_001655_080 0.102200936 - - Purple acid phosphatase precursor, putative [Ricinus communis]
20 Hb_048141_050 0.1022870145 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]

Gene co-expression network

sample Hb_000313_250 Hb_000313_250 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_110266_010 Hb_110266_010 Hb_000313_250--Hb_110266_010 Hb_092516_010 Hb_092516_010 Hb_000313_250--Hb_092516_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_021443_060 Hb_021443_060 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_000236_130 Hb_000236_130 Hb_000890_170--Hb_000236_130 Hb_000007_330 Hb_000007_330 Hb_000890_170--Hb_000007_330 Hb_001926_070 Hb_001926_070 Hb_000890_170--Hb_001926_070 Hb_001606_010 Hb_001606_010 Hb_000890_170--Hb_001606_010 Hb_000294_020 Hb_000294_020 Hb_000890_170--Hb_000294_020 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_092516_010 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_000358_160 Hb_000358_160 Hb_092516_010--Hb_000358_160 Hb_092516_010--Hb_000294_020 Hb_092516_010--Hb_021443_060 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_002007_120--Hb_048141_050 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_027684_010 Hb_027684_010 Hb_021443_060--Hb_027684_010 Hb_021443_060--Hb_000358_160 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_001266_010 Hb_001266_010 Hb_000005_060--Hb_001266_010 Hb_000282_020 Hb_000282_020 Hb_000005_060--Hb_000282_020 Hb_000069_440 Hb_000069_440 Hb_000005_060--Hb_000069_440 Hb_000005_060--Hb_023582_010 Hb_023827_030 Hb_023827_030 Hb_000005_060--Hb_023827_030 Hb_004411_010 Hb_004411_010 Hb_000005_060--Hb_004411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30034 9.02422 69.7484 25.1233 0.425589 0.287593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.471622 0.317859 0.19168 1.11498 45.8399

CAGE analysis