Hb_002007_120

Information

Type -
Description -
Location Contig2007: 79286-80615
Sequence    

Annotation

kegg
ID rcu:RCOM_1432600
description hypothetical protein
nr
ID XP_012089030.1
description PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
swissprot
ID F4J7A7
description PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 PE=2 SV=1
trembl
ID B9RF91
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432600 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20370: 79281-80604
cDNA
(Sanger)
(ID:Location)		 031_A05.ab1: 79817-80569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_120 0.0 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
2 Hb_110266_010 0.0613355731 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
3 Hb_000313_250 0.0833882689 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
4 Hb_048141_050 0.0840674374 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
5 Hb_092516_010 0.0905678996 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
6 Hb_000530_040 0.0929663499 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
7 Hb_000962_090 0.0931936898 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
8 Hb_000358_160 0.0945948235 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
9 Hb_001424_010 0.0973336337 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_078954_030 0.0976229485 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001343_030 0.0993763353 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
12 Hb_179129_010 0.1001667275 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
13 Hb_004884_100 0.1002648671 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
14 Hb_028227_060 0.1025671444 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
15 Hb_000340_280 0.1025722989 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002805_200 0.1037837676 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
17 Hb_000282_020 0.1041344002 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
18 Hb_000069_440 0.1049620625 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
19 Hb_000648_070 0.1050696374 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
20 Hb_000123_360 0.105469734 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_120 Hb_002007_120 Hb_110266_010 Hb_110266_010 Hb_002007_120--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_002007_120--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_002007_120--Hb_048141_050 Hb_092516_010 Hb_092516_010 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_110266_010--Hb_092516_010 Hb_110266_010--Hb_000313_250 Hb_110266_010--Hb_048141_050 Hb_000294_020 Hb_000294_020 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_000313_250--Hb_092516_010 Hb_021443_060 Hb_021443_060 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_004346_050 Hb_004346_050 Hb_048141_050--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_048141_050--Hb_016371_010 Hb_179129_010 Hb_179129_010 Hb_048141_050--Hb_179129_010 Hb_004411_010 Hb_004411_010 Hb_048141_050--Hb_004411_010 Hb_048141_050--Hb_078954_030 Hb_000087_040 Hb_000087_040 Hb_048141_050--Hb_000087_040 Hb_000358_160 Hb_000358_160 Hb_092516_010--Hb_000358_160 Hb_092516_010--Hb_000294_020 Hb_092516_010--Hb_021443_060 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_001424_010 Hb_001424_010 Hb_000530_040--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_000530_040--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000530_040--Hb_003573_030 Hb_001975_120 Hb_001975_120 Hb_000530_040--Hb_001975_120 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220 Hb_000530_040--Hb_078954_030 Hb_005211_080 Hb_005211_080 Hb_000962_090--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.343545 2.3048 32.6988 8.13586 0.211043 0.0838655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335261 0.164823 0.0612364 0.224604 22.138

CAGE analysis