Hb_000294_020

Information

Type -
Description -
Location Contig294: 34975-37366
Sequence    

Annotation

kegg
ID rcu:RCOM_0076880
description ARF GTPase activator, putative
nr
ID XP_012077788.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
swissprot
ID Q8L7A4
description Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1
trembl
ID A0A067KDT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13428 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable adp-ribosylation factor gtpase-activating protein agd11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30756: 34973-37357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000294_020 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
2 Hb_003777_090 0.0571689171 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
3 Hb_000483_470 0.067766999 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000236_130 0.0693610594 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
5 Hb_092516_010 0.0710697373 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
6 Hb_000928_100 0.0741101233 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_022167_010 0.0764559941 - - Kinase, putative isoform 2 [Theobroma cacao]
8 Hb_000345_400 0.0816514379 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000890_170 0.0841687912 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
10 Hb_000692_060 0.0847892555 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_110266_010 0.085055299 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
12 Hb_179129_010 0.0882412257 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
13 Hb_000313_250 0.0915951965 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_003937_010 0.0918455381 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
15 Hb_078954_030 0.092780451 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007254_010 0.0946129434 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
17 Hb_004346_050 0.0952098092 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
18 Hb_063405_010 0.0965154644 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
19 Hb_000025_700 0.0988992666 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
20 Hb_000359_050 0.1002715678 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000294_020 Hb_000294_020 Hb_003777_090 Hb_003777_090 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000236_130 Hb_000236_130 Hb_000294_020--Hb_000236_130 Hb_092516_010 Hb_092516_010 Hb_000294_020--Hb_092516_010 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000294_020--Hb_022167_010 Hb_003777_090--Hb_000236_130 Hb_063405_010 Hb_063405_010 Hb_003777_090--Hb_063405_010 Hb_003777_090--Hb_000483_470 Hb_003937_010 Hb_003937_010 Hb_003777_090--Hb_003937_010 Hb_003777_090--Hb_022167_010 Hb_004109_140 Hb_004109_140 Hb_000483_470--Hb_004109_140 Hb_000483_470--Hb_000928_100 Hb_060534_010 Hb_060534_010 Hb_000483_470--Hb_060534_010 Hb_000025_700 Hb_000025_700 Hb_000483_470--Hb_000025_700 Hb_000236_130--Hb_022167_010 Hb_000692_060 Hb_000692_060 Hb_000236_130--Hb_000692_060 Hb_000890_170 Hb_000890_170 Hb_000236_130--Hb_000890_170 Hb_179129_010 Hb_179129_010 Hb_000236_130--Hb_179129_010 Hb_000358_160 Hb_000358_160 Hb_092516_010--Hb_000358_160 Hb_021443_060 Hb_021443_060 Hb_092516_010--Hb_021443_060 Hb_110266_010 Hb_110266_010 Hb_092516_010--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_092516_010--Hb_000313_250 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_022167_010--Hb_179129_010 Hb_022167_010--Hb_000692_060 Hb_022167_010--Hb_033834_020 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210654 9.00786 59.3854 14.5273 0 0.0185452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192857 0.151687 0.3499 2.10252 40.2985

CAGE analysis