Hb_063405_010

Information

Type -
Description -
Location Contig63405: 9889-13002
Sequence    

Annotation

kegg
ID vvi:100232954
description (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
nr
ID XP_012079744.1
description PREDICTED: probable terpene synthase 3 [Jatropha curcas]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID G4XGW4
description (E)-beta-caryophyllene synthase OS=Vitis vinifera PE=2 SV=1
Gene Ontology
ID GO:0010333
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063405_010 0.0 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
2 Hb_003937_010 0.0678199476 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
3 Hb_003777_090 0.0678552489 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
4 Hb_000705_010 0.0738933441 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
5 Hb_001321_010 0.0899981232 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
6 Hb_000270_090 0.0912273587 - - nitrate transporter, putative [Ricinus communis]
7 Hb_000697_020 0.0914016838 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
8 Hb_006618_110 0.0918435238 - - -
9 Hb_003337_020 0.0959293584 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
10 Hb_000294_020 0.0965154644 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_004017_030 0.0991416114 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
12 Hb_004994_030 0.1007694298 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
13 Hb_132356_010 0.1015290449 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000483_470 0.1016131666 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_061126_010 0.1028018245 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_000265_170 0.1053947709 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
17 Hb_000155_020 0.1072485725 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002010_030 0.1084359043 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_002407_090 0.1087546006 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
20 Hb_000483_430 0.110773241 - - -

Gene co-expression network

sample Hb_063405_010 Hb_063405_010 Hb_003937_010 Hb_003937_010 Hb_063405_010--Hb_003937_010 Hb_003777_090 Hb_003777_090 Hb_063405_010--Hb_003777_090 Hb_000705_010 Hb_000705_010 Hb_063405_010--Hb_000705_010 Hb_001321_010 Hb_001321_010 Hb_063405_010--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_063405_010--Hb_000270_090 Hb_000697_020 Hb_000697_020 Hb_063405_010--Hb_000697_020 Hb_006618_110 Hb_006618_110 Hb_003937_010--Hb_006618_110 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_000155_020 Hb_000155_020 Hb_003937_010--Hb_000155_020 Hb_001014_240 Hb_001014_240 Hb_003937_010--Hb_001014_240 Hb_003937_010--Hb_003777_090 Hb_000294_020 Hb_000294_020 Hb_003777_090--Hb_000294_020 Hb_000236_130 Hb_000236_130 Hb_003777_090--Hb_000236_130 Hb_000483_470 Hb_000483_470 Hb_003777_090--Hb_000483_470 Hb_022167_010 Hb_022167_010 Hb_003777_090--Hb_022167_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000705_010--Hb_000270_090 Hb_000705_010--Hb_001321_010 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030 Hb_001321_010--Hb_000270_090 Hb_001321_010--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_001321_010--Hb_011104_020 Hb_002007_220 Hb_002007_220 Hb_001321_010--Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_001321_010--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_001321_010--Hb_002407_090 Hb_000270_090--Hb_004994_030 Hb_000270_090--Hb_011104_020 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_000270_090--Hb_002007_220 Hb_000270_090--Hb_002407_090 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_001172_150 Hb_001172_150 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0231816 0.0977136 0.0266462 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00832112 0.0878597

CAGE analysis