Hb_000212_270

Information

Type -
Description -
Location Contig212: 295838-301296
Sequence    

Annotation

kegg
ID rcu:RCOM_1077680
description calreticulin, putative
nr
ID XP_002514817.1
description calreticulin, putative [Ricinus communis]
swissprot
ID O04153
description Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=1 SV=2
trembl
ID B9RM48
description Calreticulin, putative OS=Ricinus communis GN=RCOM_1077680 PE=3 SV=1
Gene Ontology
ID GO:0005783
description calreticulin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_270 0.0 - - calreticulin, putative [Ricinus communis]
2 Hb_008878_020 0.0809009739 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
3 Hb_000175_200 0.0826001267 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000697_020 0.0898318355 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
5 Hb_001898_100 0.0955693175 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
6 Hb_001172_150 0.1008197418 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_003119_130 0.1050499474 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
8 Hb_003337_020 0.108980831 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
9 Hb_002890_160 0.1104138564 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
10 Hb_001266_130 0.1124167268 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
11 Hb_003020_070 0.1143678603 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
12 Hb_061126_010 0.1151703674 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000538_250 0.1157021137 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
14 Hb_002030_090 0.1208947985 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_000037_200 0.1271792751 - - RNA binding protein, putative [Ricinus communis]
16 Hb_016687_010 0.1290266916 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
17 Hb_000345_400 0.1295146657 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000265_170 0.1297193543 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
19 Hb_001227_140 0.1328752175 - - PREDICTED: protein ROS1 [Jatropha curcas]
20 Hb_001638_190 0.1333223072 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_270 Hb_000212_270 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_008878_020--Hb_000697_020 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_000175_200--Hb_003119_130 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_000175_200--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_000175_200--Hb_001638_190 Hb_004102_080 Hb_004102_080 Hb_000175_200--Hb_004102_080 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_000697_020--Hb_001172_150 Hb_063405_010 Hb_063405_010 Hb_000697_020--Hb_063405_010 Hb_000705_010 Hb_000705_010 Hb_000697_020--Hb_000705_010 Hb_001544_060 Hb_001544_060 Hb_001898_100--Hb_001544_060 Hb_003337_020 Hb_003337_020 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_001898_100--Hb_001266_130 Hb_001172_150--Hb_003119_130 Hb_001172_150--Hb_061126_010 Hb_001172_150--Hb_000705_010 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_003119_130--Hb_016687_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290168 5.27064 19.0193 3.65047 0.0119714 0.41665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203747 0.114499 0.129365 3.50718 14.3118

CAGE analysis