Hb_000175_200

Information

Type -
Description -
Location Contig175: 123289-126801
Sequence    

Annotation

kegg
ID rcu:RCOM_0900590
description hypothetical protein
nr
ID XP_002517642.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900590 PE=4 SV=1
Gene Ontology
ID GO:0009570
description post-illumination chlorophyll fluorescence increase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16686: 123315-126736 , PASA_asmbl_16687: 124807-124920 , PASA_asmbl_16688: 126039-126432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000212_270 0.0826001267 - - calreticulin, putative [Ricinus communis]
3 Hb_003119_130 0.0991406492 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
4 Hb_000345_400 0.1055833353 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001898_100 0.111117482 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
6 Hb_001638_190 0.1141078908 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_004102_080 0.1146292831 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_001172_150 0.1148869405 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
9 Hb_003453_060 0.1251288269 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
10 Hb_003020_070 0.125625655 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
11 Hb_000697_020 0.1281427292 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
12 Hb_001227_140 0.1291540406 - - PREDICTED: protein ROS1 [Jatropha curcas]
13 Hb_003915_020 0.1308271943 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
14 Hb_000252_240 0.1316568418 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
15 Hb_002890_160 0.1358028691 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
16 Hb_005513_020 0.1372316201 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
17 Hb_121089_010 0.1389107025 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
18 Hb_061126_010 0.138952022 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_008878_020 0.1407960122 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
20 Hb_001544_060 0.1429679536 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_200 Hb_000175_200 Hb_000212_270 Hb_000212_270 Hb_000175_200--Hb_000212_270 Hb_003119_130 Hb_003119_130 Hb_000175_200--Hb_003119_130 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_001898_100 Hb_001898_100 Hb_000175_200--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_000175_200--Hb_001638_190 Hb_004102_080 Hb_004102_080 Hb_000175_200--Hb_004102_080 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_000212_270--Hb_001898_100 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_000212_270--Hb_003119_130 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_003119_130--Hb_001172_150 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_000345_400--Hb_001638_190 Hb_000294_020 Hb_000294_020 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000358_160 Hb_000358_160 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_110266_010 Hb_110266_010 Hb_000345_400--Hb_110266_010 Hb_001544_060 Hb_001544_060 Hb_001898_100--Hb_001544_060 Hb_003337_020 Hb_003337_020 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130 Hb_000188_070 Hb_000188_070 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_001638_190--Hb_001958_030 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_001638_190--Hb_000358_160 Hb_003915_020 Hb_003915_020 Hb_004102_080--Hb_003915_020 Hb_121089_010 Hb_121089_010 Hb_004102_080--Hb_121089_010 Hb_000926_040 Hb_000926_040 Hb_004102_080--Hb_000926_040 Hb_021346_050 Hb_021346_050 Hb_004102_080--Hb_021346_050 Hb_010868_040 Hb_010868_040 Hb_004102_080--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175583 3.76453 21.9328 3.71696 0 0.19687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.482515 0.442816 0.294311 3.88931 15.7168

CAGE analysis